1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...aacaaaatctacagagcttttccttattggggttcttgctaatggtgcactcaatcctttggtatgatggttgaccgactgtctcaacttgttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGGAAGCTGACAGAGACTGCGTTCTCCCGTGGGAGCGGCGATAACATCACCT
species | Zea mays |
transcript | GRMZM2G158818_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TTGGCAACCGTCTCTTAAAACAATTTGTTATTGCAGACCCTGAGATTCAG GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGGEST: gi|37393001|gb|CF633755.1|CF633755
genomic: TTGGCAACCGTCTCTTAAAACAATTTGTTATTGCAGACCCTGAGATTCAGgtaatttgat ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
EST: TTGGCAACCGTCTCTTAAAACAATTTGTTATTGCAGACCCTGAGATTCAG GACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
genomic: TTGGCAACCGTCTCTTAAAACAATTTGTTATTGCAGACCCTGAGATTCAGgtaatttgat ... gttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGG
tgcactcaatcctttggtatgatggttgaccgactgtctcaacttgttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGGAAGCTGACAGAGACTGCGTTCTCCCGTGGGAGCGGCGATAACATCACCT
ggttgac putative branch site (score: 4)
cttgttccc putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aacaaaatctacagagcttttccttattggggttcttgctaatggtgcactcaatcctttggtatgatggttgaccgactgtctcaacttgttcccacagGACGCTGTTTCACTTGTGAAGATGGAGGAGGATCCTGAGGCAGCAGCCCGGAAGCTGACAGAGACTGCGTTCTCCCGTGGGAGCGGCGATAACATCACCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA