1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
...tgctttgtttatttatcaactacctctgtatagctcttaaaagactgccttcagatgtattgaactaagttaatatctgttggtttcttctgcatttcagATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAGGTGAATTCAGTAAACTGAAGGATAGTGGGTTGTTACAAAGAATCGGGTTGCAATATCACT
species | Zea mays |
transcript | GRMZM2G158097_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ATCAAGTTTTTGACGCACTAGTCNAAGGTTTGATGAGCCTCACTACCAAG ATGAATGTGTCATCATTACATATTACGTTTEST: gi|71318422|gb|DR795977.1|DR795977
genomic: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggt ... tgcatttcagATGAATGTGTCATCATTACATATTACGTTT
EST: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAG ATGAATGTGTCATCATTEST: gi|76922721|gb|DV169140.1|DV169140
genomic: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggt ... tgcatttcagATGAATGTGTCATCATT
EST: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAG ATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAAGTGAATT
genomic: ATCAAGTTTTTGACGCACTAGTCAAAGGTTTGATGAGCCTCACTACCAAGgtatctgggt ... tgcatttcagATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAGGTGAATT
tgccttcagatgtattgaactaagttaatatctgttggtttcttctgcatttcagATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAGGTGAATTCAGTAAACTGAAGGATAGTGGGTTGTTACAAAGAATCGGGTTGCAATATCACT
agttaat putative branch site (score: 4)
tttcttctgcatttc putative PPT
aactaagttaatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgctttgtttatttatcaactacctctgtatagctcttaaaagactgccttcagatgtattgaactaagttaatatctgttggtttcttctgcatttcagATGAATGTGTCATCATTACATATTACGTTTCCGTCCGAAGGTGAATTCAGTAAACTGAAGGATAGTGGGTTGTTACAAAGAATCGGGTTGCAATATCACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA