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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaatgctttgttgaatgtcttttattttctcctcagctactgcagatagattggcggctaatcttttcacaatctttagCGGTGAGCCCCTGACTGTCCAGAGGCCAGGAACACAGACTAGG

Basic information

species Zea mays
transcript GRMZM2G157772_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157772_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g16980.4 (Oryza sativa), 3'ss of exon 9
gtaatgctttgttgaatgtcttttattttctcctcagctactg--cagatagattggcggctaatctt--ttcacaatctt-tagCGGTGAGCCCCTGACTGTCCAGAGGCCAGGAACACAGACTAGG---------------------------------------------------------
||||||||  | ||||  ||||| |   |   ||||| |  ||  ||| | |    |  ||| || ||  | || ||| ||  || || |||||||||||||| |||| |||||||||||| ||||||                                                         
gtaatgctc-gctgaacttctttcaacattctctcaggttgtgtccagttggtcctggagcttattttcatacataattttacagTGGCGAGCCCCTGACTGTTCAGAAGCCAGGAACACAAACTAGGAGCTTCTGCTATGTTGCTGACATGGTTTGTCACCCCTTTTGAAATGTCATTAATTAA

upper sequence: GRMZM2G157772_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os03g16980.3 (Oryza sativa), 3'ss of exon 8
gtaatgctttgttgaatgtcttttattttctcctcagctactg--cagatagattggcggctaatctt--ttcacaatctt-tagCGGTGAGCCCCTGACTGTCCAGAGGCCAGGAACACAGACTAGG------------------------
||||||||  | ||||  ||||| |   |   ||||| |  ||  ||| | |    |  ||| || ||  | || ||| ||  || || |||||||||||||| |||| |||||||||||| ||||||                        
gtaatgctc-gctgaacttctttcaacattctctcaggttgtgtccagttggtcctggagcttattttcatacataattttacagTGGCGAGCCCCTGACTGTTCAGAAGCCAGGAACACAAACTAGGAGCTTCTGCTATGTTGCTGACATG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttctcctcagctactgcagatagattggcggctaatcttttcacaatctttagCGGTGAGCCCCTGACTGTCCAGAGGCCAGGAACACAGACTAGG
                               ggctaat  putative branch site (score: 3)
                                     tcttttcac  CT-rich tract
                                  taatctttt  TA-rich tract