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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatattcttcccaagttcagtactagtttttttttcattgtccctcatttccttggttatatcttctaccttatgttcatggttcttcttcaaatattgctgctcatgagttcaccatttttgtctgggcctatacagcgaagtaattttctaatggattctcaatgattttgcagACCTTATATCAACTGTACATCATAAATGCTGGCCAAGGATTCAAGATATTATGGGGTACAATAAAATCATTTCTTGATCCAGAAACCGCTTCAAAAATTC

Basic information

species Zea mays
transcript GRMZM2G157043_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G157043_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g50616.1 (Oryza sativa), 3'ss of exon 5
gtatattcttcccaagttcagtactagtttttttttcattgtccctcatttccttggttatatcttctaccttatgttcatggttcttcttcaaatattgctgctcatgagttcaccatttttgtctgggcctatacagcgaagtaattttctaatggattctcaatgattttgcagACCTTATATCAACTGTACATCATAAATGCTGGCCAAGGATTCAAGATATTATGGGGTACAATAAAATCATTTCTTGATCCAGAAACCGCTTCAAAAATTC
                        ||| |  ||   |||| |   | | |    |  ||   | ||   | ||   ||| |  ||  ||   | |||    |    |  | ||     ||||| ||||||   |||   | ||| | || ||||||   ||   | || |  ||||||||||  | | | ||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||| ||||| || ||||
-----------------------gtaggtgattc--cattatgttttaatgttatttttcactattgccctttcacttcgttttttgtcactatatacatttctatagaactt----gtttttatctggggtcata--acaaaggacttatctaatacctttctagtgctcgtgcagACCTTGCACCGATTGTACATTATAAATGCTGGCCAAGGCTTCAAGATGTTATGGGGTACAATAAAATCATTTCTTGATCCACAAACTGCTTCGAAGATTC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgtctgggcctatacagcgaagtaattttctaatggattctcaatgattttgcagACCTTATATCAACTGTACATCATAAATGCTGGCCAAGGATTCAAGATATTATGGGGTACAATAAAATCATTTCTTGATCCAGAAACCGCTTCAAAAATTC
                           ttctaat  putative branch site (score: 2)
                   aagtaattttctaat  TA-rich tract