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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tgtctgggactttcatgttagttctcctgatgatctttataagatcacatgcaaaacatatctgttgtgtttactgagcctctatagggtttgtgtgcagGTTCTGGTAGGGGTGAGATTTCTGCGGCAGTGGCCATTTATTGGGCGTGTAAGAGTATGCTTTGTTGAGCCTCCATACTTCCAAATGACAGTGAAACCGC

Basic information

species Zea mays
transcript GRMZM2G156238_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156238_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g20970.1 (Oryza sativa), 3'ss of exon 5
tgtctgggactttcatgttagttctcctgatgatctttataagatcacatgcaaaacatatctgttgtgtttactgagcctc-tatagggtttgtgt----gcagGTTCTGGTAGGGGTGAGATTTCTGCGGCAGTGGCCATTTATTGGGCGTGTAAGAGTATGCTTTGTTGAGCCTCCATACTTCCAAATGACAGTGAAACCGC
                || || |||  ||| |     || || ||   | |   || | |  | ||||| ||||| | | |  | |||  ||| ||       |||| || || |||||| ||||||| || |||||||||| |||||| || |||||||| |||||||||||||||||||||||||| |||||||| |||||  
----------------gtaagctctt-tgagg-----tagaatatgtaaagtttaatacagtt-ttgtgcttacttaacattgtctagaatttatgcttacatagGTCCTAGTTGGGGTGCGATTTCTCCGACAGTGGCCATATATTGGTCGCGTAAGAGTGTGCTTTGTTGAGCCTCCATACTTCCAGATGACAGTCAAACCAT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

cacatgcaaaacatatctgttgtgtttactgagcctctatagggtttgtgtgcagGTTCTGGTAGGGGTGAGATTTCTGCGGCAGTGGCCATTTATTGGGCGTGTAAGAGTATGCTTTGTTGAGCCTCCATACTTCCAAATGACAGTGAAACCGC
       aaaacatat  TA-rich tract