Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacgtttcagacactaattgtgctcttcaggtatgcaggagttacatatggtgcattcacttaattgtcttttctgtttgcttacacttgcagGCTGAAAGACAAGTACCACCCAACTAACCTATTATCTGTTATCGAAAG

Basic information

species Zea mays
transcript GRMZM2G156099_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G156099_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g48530.1 (Oryza sativa), 3'ss of exon 5
gtacgtttcagacactaattgtgctcttcaggtatgcaggagttacatatggtgcattcactt-aattgtcttttctgtttgcttacacttgcagGCTGAAAGACAAGTACCACCCAACTAACCTATTATCTGTTATCGAAAG
||| ||     | | | |||  ||| | ||   |   ||||   | | ||||| || |  ||| || || | ||||  ||||||| |||||||||| |||||||||||||||| || || ||| | | ||||||||| || ||
gtaagtc----aaaatgatttagctgtaca--caactaggaacaaaa-atggtccacttgctttaactgacatttc-atttgctttcacttgcagGTTGAAAGACAAGTACCATCCGACCAACTTGTCATCTGTTATTGACAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|5928853|gb|AW056145.1|AW056145
EST:     CAAAAACGAAGATTG                         GCTGAAAGACAAGTACCACCCAACTAACCTATTATCTGTTATCGAAAG
genomic: CAAAAACGAAGATTGgtacgtttca ... acacttgcagGCTGAAAGACAAGTACCACCCAACTAACCTATTATCTGTTATCGAAAG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gagttacatatggtgcattcacttaattgtcttttctgtttgcttacacttgcagGCTGAAAGACAAGTACCACCCAACTAACCTATTATCTGTTATCGAAAG
                                        tgcttac  putative branch site (score: 2)
                    acttaatt  TA-rich tract