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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...tatttcaccttttggatatgcttcattttttaataaatatactgcttacatgctatgaaaaactgttagattttgaatgaataacttgtcttctgtgcagAAATTTGGCCGGCGAGATTGCACAAGAATTCCAAAAGCGTCAG

Basic information

species Zea mays
transcript GRMZM2G155384_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G155384_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g05340.1 (Oryza sativa), 3'ss of exon 5
tatttcaccttttggatatgcttcattttttaataaatatactgcttacatgctatgaaaaactgttagattttgaatgaataacttgtcttctgtgcagAAATTTGGCCGGCGAGATTGCACAAGAATTCCAAAAGCGTCAG
||||| | |  |    |     ||| | | | |||   ||  |  ||   || | | |  |  | || |  ||  ||||||  |  |||||  ||| |||||||||||| ||||| |||||||||||||||||||||||||||
tattttaacagtgtattcaaactcaatatattatactaatgttttttttttgttttcattacatatttgggttctaatgaaatagctgtctcttgtacagAAATTTGGCAGGCGAAATTGCACAAGAATTCCAAAAGCGTCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttacatgctatgaaaaactgttagattttgaatgaataacttgtcttctgtgcagAAATTTGGCCGGCGAGATTGCACAAGAATTCCAAAAGCGTCAG
                                 gaataac  putative branch site (score: 2)
                                       cttgtcttct  CT-rich tract
                        attttgaatgaataa  TA-rich tract