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...aaacatattaagcctaccctaatcagggttttcctattctaacaccgccaacgcataagtttaagatccatttcttgtcttatgatttctcattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCAAAAGATGCCCTTGTTCTTTACAG
species | Zea mays |
transcript | GRMZM2G155323_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCAEST: gi|32841540|gb|CD981221.1|CD981221
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|32841013|gb|CD980694.1|CD980694
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|32841524|gb|CD981205.1|CD981205
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|32841290|gb|CD980971.1|CD980971
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|32931996|gb|CF036808.1|CF036808
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|67017679|gb|CO446428.1|CO446428
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCAEST: gi|32840967|gb|CD980648.1|CD980648
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|21088934|gb|BQ401247.1|BQ401247
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: TACATTTCTGCCAGAGCGGCATGGTAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCAEST: gi|19822144|gb|BQ048168.1|BQ048168
genomic: TACATTTCTGCCAGAGCGGCA-GGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATGACTGAATTCAAATACAGATACGATTCTEST: gi|32840962|gb|CD980643.1|CD980643
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCT
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|32841507|gb|CD981188.1|CD981188
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCAEST: gi|32841337|gb|CD981018.1|CD981018
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
EST: CTACATTTCTGCCAGAGCAGCAGGGAAGCTTCAAAAAATTCACAGAATTG GTTGGCAGGATGAATATTACTGAATTCAAATACAGATATGATTCTAATGCA
genomic: CTACATTTCTGCCAGAGCGGCAGGGAAGCTTCAAAAAATTCACAGAATTGgtatgccata ... cattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCA
cgccaacgcataagtttaagatccatttcttgtcttatgatttctcattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCAAAAGATGCCCTTGTTCTTTACAG
tttctcattct CT-rich tract
ataagtttaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaacatattaagcctaccctaatcagggttttcctattctaacaccgccaacgcataagtttaagatccatttcttgtcttatgatttctcattctgtagGTTGGCAGGATGAATATTACTGAATTCAAATACAGATACGATTCTAATGCAAAAGATGCCCTTGTTCTTTACAG
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aaacata
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