1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...gaggcgcggacacaagtattacatgctacatacagtttctttctgaaagctgatcataaccgtatgtttgattaatcccatcatctccatgctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACTCCTCGGTGCTCTTTCCCATCTGTGTCATCATGCAAAGAAATTGAAGTT
species | Zea mays |
transcript | GRMZM2G155312_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACEST: gi|211241148|gb|FL072649.1|FL072649
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACEST: gi|211243384|gb|FL072664.1|FL072664
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGGGCTCGATGATGAEST: gi|211241151|gb|FL072652.1|FL072652
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGA
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACEST: gi|211241143|gb|FL072644.1|FL072644
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACEST: gi|211241147|gb|FL072648.1|FL072648
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGNACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGTGCTCEST: gi|211243378|gb|FL072658.1|FL072658
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTC
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGNGCTCGATGATGAGGGCTATACEST: gi|211241154|gb|FL072655.1|FL072655
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
EST: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAG GTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
genomic: TGTTACCCCACCAACATAAAGGAAGAGACAGATCCAGAGTACTTTTGCAGgtagcagctt ... gctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATAC
aaagctgatcataaccgtatgtttgattaatcccatcatctccatgctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACTCCTCGGTGCTCTTTCCCATCTGTGTCATCATGCAAAGAAATTGAAGTT
ctatttc CT-rich tract
tatgtttgattaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gaggcgcggacacaagtattacatgctacatacagtttctttctgaaagctgatcataaccgtatgtttgattaatcccatcatctccatgctatttcagGTATATACCACTCAGTCGACTTCAAATTGTGCTCGATGATGAGGGCTATACTCCTCGGTGCTCTTTCCCATCTGTGTCATCATGCAAAGAAATTGAAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - -ggacaca
- - - - - - - - - -tacatgc
- - - - - - - - - - - - - -acataca
- - - - - - - - - - - - - - - - - - - -tttctga
- - - - - - - - - - - - - - - - - - - - - - - - gctgatc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atgtttg