1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tattttgtttgtgctgcgaatgcagaatctgcagttccccatctgaattagtttatggccttttccacggcaggccgactcaccttccatcttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCTGCAGCGCTTACACGGGAGAGGGGCTTCTCGAGGGCTTCGACTGGCTGG
species | Zea mays |
transcript | GRMZM2G154890_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAAATTGTGGGCEST: gi|60358498|gb|DN225471.1|DN225471
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|5919346|gb|AW054443.1|AW054443
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAAATTGTGGGCEST: gi|60345034|gb|DN212007.1|DN212007
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|76016498|gb|DT943668.1|DT943668
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|5932640|gb|AW057001.1|AW057001
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAAATTGNGGGCEST: gi|78082478|gb|DV510890.1|DV510890
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|60345576|gb|DN212549.1|DN212549
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|91874745|gb|EB404702.1|EB404702
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|78114766|gb|DV533154.1|DV533154
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTTTGAATTTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|211291158|gb|FL439700.1|FL439700
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAAATTGTGGGCEST: gi|60336929|gb|DN203902.1|DN203902
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|19351517|gb|BM896049.1|BM896049
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|78112615|gb|DV531009.1|DV531009
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|78114767|gb|DV533155.1|DV533155
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|74239326|gb|DT647240.1|DT647240
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGEST: gi|60339777|gb|DN206750.1|DN206750
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTG
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|211435009|gb|FL439413.1|FL439413
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAAATTGTGGGCEST: gi|71318962|gb|DR796230.1|DR796230
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGATTCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|211350430|gb|FL481328.1|FL481328
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAAATTGTGGGCEST: gi|5770292|gb|AI973466.1|AI973466
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|32945513|gb|CF050332.1|CF050332
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCEST: gi|50339680|gb|CO534806.1|CO534806
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
EST: CAAATAAGCAAGACATCCAGGGAGCTCTAAAACCAGATGAAATTGCGAAG GTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
genomic: CAAATAAGCAAGACATACAGGGAGCTCTAAAACCAGATGAAATTGCGAAGgtaagcaaac ... cttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGC
aattagtttatggccttttccacggcaggccgactcaccttccatcttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCTGCAGCGCTTACACGGGAGAGGGGCTTCTCGAGGGCTTCGACTGGCTGG
gactcac putative branch site (score: 2)
ctcaccttccatcttt CT-rich tract
atctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tattttgtttgtgctgcgaatgcagaatctgcagttccccatctgaattagtttatggccttttccacggcaggccgactcaccttccatcttttttcagGTTCTGAATCTGGAAGTGATGGACAGAAGCAGGCACTGGAAGATTGTGGGCTGCAGCGCTTACACGGGAGAGGGGCTTCTCGAGGGCTTCGACTGGCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- ttttgtt
- - - - - gtgctgc
- - - - - - - - -gaatgca
- - - - - - - - - - - - - -tctgcag
- - - - - - - - - - - - - - - - - - - ccatctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcaggcc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - caccttc