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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttttttctctgatgaaaatatctattgttattacaacaatagttgctcttgcttgcttaaatcttattctgatgtgtagGTGGGAGACACTTGGTGATATCGTCATACTTCCAAAGACATGTTTTAAGAATCCATTGTGGGAATCTGTTAGCGAGGAACTTTGGCCACTAGTTGCCAAG

Basic information

species Zea mays
transcript GRMZM2G154574_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154574_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os07g33100.1 (Oryza sativa), 3'ss of exon 5
------------------------gtttttttctctgatga-aaatatctattgttatta------caaca-------atagttgctct-tgcttgcttaaatcttattctgatgtgtagGTGGGAGACACTTGGTGATATCGTCATACTTCCAAAGACATGTTTTAAGAATCCATTGTGGGAATCTGTTAGCGAGGAACTTTGGCCACTAGTTGCCAAG
                        || |         || | |||||  || |  | | |      |||||       ||  ||| ||| |   |  ||   |||| || || | | ||||||||| || |||||||||||  |  | |||||||| || || |||||| ||||| |||||||||| ||||| || || ||||||||||||||||| |||
gtttggtctctgatcttaaatggagtatgaaatataaataataaatacataataatctaagaaaagcaacacatttttatcattgatctgtatgtatttctttctttttttg-tatttagGTGGGAAACCCTTGGTGATATTATTGTGCTTCCAAAAACTTGCTTTAAGGATCCACTGTGGGAATCAGTTAGAGATGATCTTTGGCCACTAGTTGCAAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211413292|gb|FL391611.1|FL391611
EST:     CTGGAAAGTAAAGGGATGCCCTCTCAGTTGTTGCAGCAGCTTCCGGCTAG                         GTGGGAGACACTTGGTGATATCGTCATACTTCCAAAGACATGTTTTAAGAA
genomic: CTGGAAAGTAAAGGGATGCCCTCTCAGTTGTTGCAGCAGCTTCCGGCTAGgtttttttct ... tgatgtgtagGTGGGAGACACTTGGTGATATCGTCATACTTCCAAAGACATGTTTTAAGAA






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgttattacaacaatagttgctcttgcttgcttaaatcttattctgatgtgtagGTGGGAGACACTTGGTGATATCGTCATACTTCCAAAGACATGTTTTAAGAATCCATTGTGGGAATCTGTTAGCGAGGAACTTTGGCCACTAGTTGCCAAG
                                          ttctgat  putative branch site (score: 3)
                                     tcttattct  CT-rich tract
                                ttaaatcttattct  TA-rich tract