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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtttgttgtgtcataattttatgtttttgtacatttagattatgagggacatgacgagaattgttccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCA

Basic information

species Zea mays
transcript GRMZM2G154278_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G154278_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g01700.1 (Oryza sativa), 3'ss of exon 5
------------------------------------gtttgttgtgtcataattttatgtttttgtacatttagattatgagggacatgacgagaattgttccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCA
                                     | | ||   | |   |||||   ||||||    | | |   | ||    || |  |   | ||| |  ||||||| || ||||||||||| |||||||| ||||||||||| |||||||||||||||||||||||  |||| ||||| |||||  | || ||||||| ||| |
gtttgttgttttattctctccactagtgtcaaggcaatatatttcttta-ggttttactcttttgtttggtaaaacagtaagaataat-attatgctcgttgc--ttcagGAACGCCAACAAGCAGAAGAGGAGGCTAAGATGAAGGAAGCTGAACTGATGCGGGGAAACCCCCTGATCAATATTAACAACGCCGGATCCTTCAATGTTA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|28910981|gb|CB331711.1|CB331711
EST:     CAGAGCTTGAGAGGATTAAGAAAGAGAGAGCCGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCCGAGGAGGAGGCCCAGATGAAGGAGGCTGAACTGATG
genomic: CAGAGCTTGAGAGGATTAAGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAGgtttgttgtg ... tccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
EST: gi|37376787|gb|CF624950.1|CF624950
EST:     GAGA-GATTATGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAG                         GAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG
genomic: GAGAGGATTAAGAAAGAGAGAGCAGAGGAGAAGCTTAGAAAGgtttgttgtg ... tccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tatgtttttgtacatttagattatgagggacatgacgagaattgttccatttcagGAGCGGCAACAAGCAGAGGAGGAGGCCAAGATGAAGGAGGCTGAACTGATGCGGGGAAACCCTTTGATTAATATCAACAATCCTGGCTCCTTCAGTGTCA
                                            ttccatttc  CT-rich tract
          tacatttagattat  TA-rich tract