Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
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 5'  3'   		5  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...gcaattcacagtctcttccatggactttaaagccgtgtgctcctagggattttttttttgataaagctaacaggaagttatgtacgtgctcaataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC

Basic information

species Zea mays
transcript GRMZM2G153991_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153991_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g68710.2 (Oryza sativa), 3'ss of exon 5
----------------------------------------------------------------------------------gcaattcacagtctcttcca--tggactttaaa--gccgtgtgctcctaggg-attttttttttgataaagctaacaggaagttatgtacgtgctcaataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC--
                                                                                    | || ||  | | |  ||  |  | |||| |  |||    |  | |  |  |  ||||||   ||  | |||  |    |  ||     | |  ||  ||||||||||||||| || ||||| ||||||||||||||||||||||| || |||||| |||| ||||| |  |||        |  | || ||   |   |||   
gtatggtctgaatatttgtttgtttgcttgatggtttcttgtgaaagaattatccatgtgtagattctcaactttgacatggctattttaccatgtttcacacctacattttacattgccaacagggcatgtgataagttttttcccatttacctataatactgacatacggtttcgtaaccaatagGTGGAGCAACACTAATCTTTGACACGGAGCTTATCGCCGTCAATGGAAAGACAACCGGTGGTGCTA--GCAATAGTGAGCTCTAAGGTCGTCTTTGATGTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211034324|gb|FL376241.1|FL376241
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211117648|gb|FL049547.1|FL049547
EST:     CCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCCAC-AAAGATTCCGG                         GTGGAGCAACTCTGATCTTCCACACGGA
genomic: CCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCC-ACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGA
EST: gi|91054743|gb|EB165161.1|EB165161
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|24773940|gb|CA409194.1|CA409194
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|149005134|gb|EE039667.2|EE039667
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|22819346|gb|BU499436.1|BU499436
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|148931677|gb|EC874859.2|EC874859
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|30031800|gb|CB833651.1|CB833651
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211117646|gb|FL049545.1|FL049545
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCA
EST: gi|211205079|gb|FL419130.1|FL419130
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCRCCANAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211117643|gb|FL049542.1|FL049542
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGA
EST: gi|211116864|gb|FL049538.1|FL049538
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCT
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCT
EST: gi|211117642|gb|FL049541.1|FL049541
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGAT
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGAT
EST: gi|211082659|gb|FL412223.1|FL412223
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|61117990|gb|DN558951.1|DN558951
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|18179873|gb|BM381083.1|BM381083
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|116823847|gb|EC867424.1|EC867424
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|61117991|gb|DN558952.1|DN558952
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211116862|gb|FL049536.1|FL049536
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGAT
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGAT
EST: gi|22542120|gb|BU092558.1|BU092558
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211079084|gb|FL380731.1|FL380731
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|6828177|gb|AW331820.1|AW331820
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|61117992|gb|DN558953.1|DN558953
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|61117989|gb|DN558950.1|DN558950
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|18179296|gb|BM380506.1|BM380506
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|32865924|gb|CF005606.1|CF005606
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211453697|gb|FL370753.1|FL370753
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|149090104|gb|EE179400.2|EE179400
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211389797|gb|FL380127.1|FL380127
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|21987364|gb|BQ778892.1|BQ778892
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|211122276|gb|FL373651.1|FL373651
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTC-ACACGGAGCTTATCGCCCGTCA-CGGGAAG
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCC-GTCAACGGGAAG
EST: gi|149071444|gb|EE159839.2|EE159839
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATTTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|149005133|gb|EE039666.2|EE039666
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATTTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|60399310|gb|DN232124.1|DN232124
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|113686987|gb|DW842316.1|DW842316
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTAGATCTTCGACACGGAGCTTATCG
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCT-GATCTTCGACACGGAGCTTATCG
EST: gi|149071445|gb|EE159840.2|EE159840
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA
EST: gi|24773190|gb|CA408444.1|CA408444
EST:     ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAG                         GTGGAGCAACTCTGATCTTCCACACGGAGCTTATCGCCGTCAACGGGAAGA
genomic: ACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 47 (upstream exon), 49 (downstream exon)
Score: 112

GACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 189

GACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 203

GACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 234

GACCAAGGATTGCTCGGTATGTGCGTGGGTGAAAAGAGGAAGCTAAAGATACCTGCAAAGATGGGTTATGGTGAGCGAGGCTCCCCACCAAAGATTCCAGgtatggctga ... caataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggattttttttttgataaagctaacaggaagttatgtacgtgctcaataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC
                   agctaac  putative branch site (score: 234)
     tttttttttgataaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gcaattcacagtctcttccatggactttaaagccgtgtgctcctagggattttttttttgataaagctaacaggaagttatgtacgtgctcaataaatagGTGGAGCAACTCTGATCTTCGACACGGAGCTTATCGCCGTCAACGGGAAGACATCCGGCGGTGCAAAGGCAGAGAGTGACAGTGAGCTCTGATACAATGC

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - catggac
- - - - - - - - - - - - - - - - - - gtgctcc