1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgagcttaaccgacttttgagcacgggccatgtttctgtaccacttagtactctactgtgcttaaccgttcctttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCAGTCTTGGGTCCATGCCCGACATTGCGTTCACCATTGGAGGCAAGAAGT
species | Zea mays |
transcript | GRMZM2G153977_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|211422086|gb|FL442273.1|FL442273
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|60344077|gb|DN211050.1|DN211050
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|67016864|gb|CO445613.1|CO445613
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|60400185|gb|DN232992.1|DN232992
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|60339829|gb|DN206802.1|DN206802
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|21331514|gb|BQ486895.1|BQ486895
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|211224716|gb|FL222434.1|FL222434
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|60352456|gb|DN219429.1|DN219429
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|78120564|gb|DV538948.1|DV538948
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|16927203|gb|BM080272.1|BM080272
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|31627888|gb|CD526338.1|CD526338
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|31405529|gb|CD484261.1|CD484261
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|67015196|gb|CO443945.1|CO443945
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|32867897|gb|CF007579.1|CF007579
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|60354188|gb|DN221161.1|DN221161
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCEST: gi|60396263|gb|DN229132.1|DN229132
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
EST: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAG CTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
genomic: AACTGGCCCAGAACAAGACACAGGAGCTCATCCTGACCTACATTAATCAGgtgagcttaa ... tttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCC
ccatgtttctgtaccacttagtactctactgtgcttaaccgttcctttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCAGTCTTGGGTCCATGCCCGACATTGCGTTCACCATTGGAGGCAAGAAGT
gcttaac putative branch site (score: 1079)
ccgttccttt CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagcttaaccgacttttgagcacgggccatgtttctgtaccacttagtactctactgtgcttaaccgttcctttacgacagCTTTGTGAGCGTCTTCCTTCTCCCATGGGAGAATCAGCCGTGGACTGTGCCAGTCTTGGGTCCATGCCCGACATTGCGTTCACCATTGGAGGCAAGAAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
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