Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgtgttttgaactatttagttgtaacttgtaagtgtacactgttatcttttgtgaaactgacacacgggcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG

Basic information

species Zea mays
transcript GRMZM2G153704_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153704_T03 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g04190.2 (Oryza sativa), 3'ss of exon 5
----------------------gtgtgttttgaactatttagttgtaact-tgtaagtgtac----actgttatcttttgtgaaactgacacacgggc-atatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG
                       |||||||| |||||   |  |  |  |   ||||   ||    | ||| |||    |  || || ||||| |    || ||||||||||||||||| ||| | ||||||||||||||||||||||| |||||||| |||||||| ||  | || ||||||||||| ||||||||||||||||||
gtgtgtctatagattcgattaattgtgtttt-aactaggaatgtacacttgcttaagaaaaccgctattgtcatccaacggaaacctaacacatgaaagatttgcagTGCAACAGCTCATGATGTTCGCACAATGATTATTGGCCGATTACTTGCTGGGATTGGTATTGGCATATCTTCTGCTCTTGTGCCCCTTTACATATCTGAG

upper sequence: GRMZM2G153704_T03 (Zea mays), 3'ss of exon 5
lower sequence: Vv14s0006g02720.t01 (Vitis vinifera), 3'ss of exon 5
-------gtgtgttttgaactatttagttgtaacttgtaagtgtac------actgttatcttttgtga--aactgacacacgggca-tatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG
        | |||| |  || ||    |  |||  | |   | ||       |  |  |   ||| | |  |||  |   | |  || | | |||||| ||||| ||   | | |  || ||||| |||||  | || |||||||| ||||| || ||  |||||||||| ||||| || |||||||||||||||
gtctgtcatttgttgtagaccataagatcataatctttgtttatatcaaataaaagaaaatatttataataaacccaagtatgttcacttttcagTGCGACAGCACAGAGTGTGCAGACTATGATAATTGGTAGGTTACTTGCTGGCATTGGAATTGGCATCTCATCTGCACTTGTGCCACTTTACATATCTGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78078828|gb|DV507240.1|DV507240
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|211063244|gb|FL401231.1|FL401231
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTTGCT-GCTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATT-GCTTGCTG
EST: gi|148996907|gb|EE035711.2|EE035711
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|31355588|gb|CD439945.1|CD439945
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|211050167|gb|FL124868.1|FL124868
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|31355374|gb|CD439731.1|CD439731
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148977355|gb|EE026050.2|EE026050
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148971787|gb|EE022525.2|EE022525
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCCAGATATCCGCACAATGATTATTGGCCGATTGCTTGC
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGC
EST: gi|78075828|gb|DV504262.1|DV504262
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|31354767|gb|CD439124.1|CD439124
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTG
EST: gi|148981335|gb|EE027589.2|EE027589
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|149055222|gb|EE156147.2|EE156147
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTG
EST: gi|149083192|gb|EE172463.2|EE172463
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|31355150|gb|CD439507.1|CD439507
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|149082633|gb|EE171834.2|EE171834
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
EST: gi|148953947|gb|EC899333.2|EC899333
EST:     AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAG                         TGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG
genomic: AGAACATTCATCCTGGATGCAGTCCCACTTGCTCTAGGTGCATTCTTGAGgtgtgttttg ... gcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aacttgtaagtgtacactgttatcttttgtgaaactgacacacgggcatatgcagTGCAACAGCTCAAGATATCCGCACAATGATTATTGGCCGATTGCTTGCTGGAATTGGTATCGGGGTCTCATCTGCTCTTGTACCCCTTTACATATCTGAG
                                aactgac  putative branch site (score: 2)
                   ttatctttt  TA-rich tract