1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgtcagtgtgcatagtttctgttttattctctcaatcacacacccttgctattgctatattgttgttgaggctttgtttcatacccaaaagctttaaagcatggttctaacctttccataccttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGACATGGCCAAGCTCGAGGAAGCTGTTAGGAGTGTCCAGATGGAAGGACT
species | Zea mays |
transcript | GRMZM2G153569_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|4730768|gb|AI649934.1|AI649934
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|60339257|gb|DN206230.1|DN206230
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|76285318|gb|DV024886.1|DV024886
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|211291797|gb|FL131040.1|FL131040
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|61117414|gb|DN558375.1|DN558375
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|6056800|gb|AW091205.1|AW091205
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|32840968|gb|CD980649.1|CD980649
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|4804538|gb|AI665411.2|AI665411
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|67012865|gb|CO441614.1|CO441614
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|84969889|gb|DW468295.1|DW468295
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|31405963|gb|CD484695.1|CD484695
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|4827437|gb|AI668129.1|AI668129
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|33093219|gb|CF053213.1|CF053213
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|89106046|gb|DY576263.1|DY576263
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGTTGCGGCTGCCAAGGTTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|32846492|gb|CD986173.1|CD986173
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|211291796|gb|FL131039.1|FL131039
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: GGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGGATGTGAAGCCATGGGACGATGAGACTEST: gi|6021987|gb|AW066915.1|AW066915
genomic: G-CTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTG-ATGTGAAGCCATGGGACGATGAGACT
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTTTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|67037468|gb|CO464282.1|CO464282
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|32829957|gb|CD969635.1|CD969635
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|60398710|gb|DN231526.1|DN231526
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|67016304|gb|CO445053.1|CO445053
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|8273074|gb|BE012169.1|BE012169
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|166500006|gb|EG187302.1|EG187302
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCEST: gi|166603380|gb|EG170169.1|EG170169
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTC
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGEST: gi|84977404|gb|DW475826.1|DW475826
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|31406066|gb|CD484798.1|CD484798
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|31440896|gb|CD510327.1|CD510327
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|60359229|gb|DN226202.1|DN226202
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGEST: gi|33093139|gb|CF053133.1|CF053133
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
EST: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAAT CTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
genomic: TGCTGAAGAACGTGCTGCGGCTGCCAAGGCTTCTGGCAAGAAGAAAGAATgtatgtcagt ... accttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTG
tgtttcatacccaaaagctttaaagcatggttctaacctttccataccttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGACATGGCCAAGCTCGAGGAAGCTGTTAGGAGTGTCCAGATGGAAGGACT
ttctaac putative branch site (score: 1)
cctttccatacctt CT-rich tract
tttaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgtcagtgtgcatagtttctgttttattctctcaatcacacacccttgctattgctatattgttgttgaggctttgtttcatacccaaaagctttaaagcatggttctaacctttccataccttgtcagCTGGGAAATCGTCAGTTTTACTTGATGTGAAGCCATGGGACGATGAGACTGACATGGCCAAGCTCGAGGAAGCTGTTAGGAGTGTCCAGATGGAAGGACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG