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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcttaatgttcctctccagttttttcaggcctgtgcgctgagttgctgacacagaacataatttacagatcatttacatgaattaaattatctggtataaattttactgtaacttcaatggtgattaacaacaccttaataaatttgtttttatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAAGCTTTCTTGGTTGGGCTATGGCAATGATTTATATGGGTGGGCGGCTTC

Basic information

species Zea mays
transcript GRMZM2G153434_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G153434_T01 (Zea mays), 3'ss of exon 8
lower sequence: LOC_Os01g16170.4 (Oryza sativa), 3'ss of exon 8
gtaagcttaatgttcctctccagttttttcaggcctgtgcgctgagttgctgacacagaacataatttacagatcatttacatgaattaaattatctggtataaattttactgtaacttcaatggtgattaacaacaccttaataaatt-tgtttttatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAAGCTTTCTTGGTTGGGCTATGGCAATGATTTATATGGGTGGGCGGCTTC
                                                                         | |  | ||  | |  |  ||| | |||| | ||||    ||| | ||| | ||   ||||     || ||| ||| |  | || |  |||||||||| |||| | |||||||  | ||| |  |||||||||||| |||||||||||| |||||||||||||||||  | || ||||||||||| || ||||
------------------------------------------------------------------------gtaagctccagcagtacatctatttagtatgatttttttcataattgcaa-gttg--caacagtgg-ttgatacattataatcttctttcatagGATGACCATGCAGATTCATCTGTCAGCAATGGCAGTGGAAGTGGAATTGGAAGCTTCCTTGGTTGGGCTATGGCGGTAATCTATATGGGTGGACGACTTC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|22549090|gb|BU101291.1|BU101291
EST:     TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGCTTGTG                         GATGATCATGGAAATTCATCGCTTAG
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAG
EST: gi|211278622|gb|FL264828.1|FL264828
EST:     TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG                         GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: gi|89106847|gb|DY577064.1|DY577064
EST:     TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG                         GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: gi|89106878|gb|DY577095.1|DY577095
EST:     TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG                         GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: gi|26558987|gb|CA831222.1|CA831222
EST:     TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG                         GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA
EST: gi|211278621|gb|FL264827.1|FL264827
EST:     TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTG                         GATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAACTGGA
genomic: TGGCAAGTGGCACTGTCATACCAATTGGAAGAAGGCTTTTACTGTTTGTGgtaagcttaa ... tatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ctgtaacttcaatggtgattaacaacaccttaataaatttgtttttatgccatagGATGATCATGGAAATTCATCGCTTAGCCAGAGCAGTGGAAGTGAAATTGGAAGCTTTCTTGGTTGGGCTATGGCAATGATTTATATGGGTGGGCGGCTTC
                                     tttgttttt  CT-rich tract
                          accttaataaatttgt  TA-rich tract