1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' |
...aattttagggaatgttcacttgatattgtcacggaactataacttttactgcattctaaatacgaaactgcctctcttttgggtacacctgtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTGCCAAGGGCAGTGCAGCATCAAGAAACAATGAATCAGATACTACAGTTC
species | Zea mays |
transcript | GRMZM2G153434_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAACACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|22542607|gb|BU093045.1|BU093045
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: AACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|71307331|gb|DR789850.1|DR789850
genomic: AACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|26559131|gb|CA831366.1|CA831366
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: CTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGG-EST: gi|32836692|gb|CD976370.1|CD976370
genomic: CTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAACACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|89106847|gb|DY577064.1|DY577064
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|120479959|gb|EH210676.1|EH210676
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|89106878|gb|DY577095.1|DY577095
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|22521517|gb|BU080328.1|BU080328
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: GCTTTATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTEST: gi|78082255|gb|DV510667.1|DV510667
genomic: GCCACATCTACCATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
EST: CATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAG CCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
genomic: CATCATCTTAAACTAAAAAACTCCAGGGCAGCTAGCAAGgtagttactc ... gtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGT
ttactgcattctaaatacgaaactgcctctcttttgggtacacctgtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTGCCAAGGGCAGTGCAGCATCAAGAAACAATGAATCAGATACTACAGTTC
ttctaaa putative branch site (score: 53)
attctaaata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aattttagggaatgttcacttgatattgtcacggaactataacttttactgcattctaaatacgaaactgcctctcttttgggtacacctgtggtttcagCCTCAAAAGCATCAATACCGGGATGCTTCATTACGCGAAAAGCTTTTGGGTGCCAAGGGCAGTGCAGCATCAAGAAACAATGAATCAGATACTACAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA