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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttatagcttttattttgatcaataatcttaagttcttaacctaccttctctcgtactaaaacattttagtttctcttgatcattatttggttataatcttcaatttatgaattttttactgactcttggtgaactttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG

Basic information

species Zea mays
transcript GRMZM2G152757_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152757_T04 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os12g08280.1 (Oryza sativa), 3'ss of exon 5
gttatagcttttattttgatcaataatcttaagttcttaacctaccttctctcgtactaaaacattttagtttctcttgatcattatttggttataatcttcaatttatgaattttttactgactcttggtgaactttaattt-agATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG
                                  |   | |     || | || || || |||  |||   ||   || | |  ||||||   ||       || | ||   ||||| |    || ||||| |  || | ||  |||||||||| || |||||||||||||| ||| | || ||||| ||||| ||||| ||| | ||||||||| ||| |||||| || ||||| ||||| |||
---------------------------------gttacatctccttttatttcatattataac--tttgacttacttttacc--tatttgagaatgg-----aactaat---tttttaatctgcttttggttattttcacttccagATTAGTGTCTGTTCCATCGACAATCCAGTCGAAGCTTCATTCTTTGAGTCCTACGAAGGGGCACACTCCTTGCGTGATTTAACAGGCTCCATTGCGGAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|78086723|gb|DV515116.1|DV515116
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|32842118|gb|CD981799.1|CD981799
EST:     CTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: CTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|13316247|gb|BG410694.1|BG410694
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|32841860|gb|CD981541.1|CD981541
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|71435796|gb|DR816846.1|DR816846
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|67013898|gb|CO442647.1|CO442647
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         AATAGTGGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTG-TTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATC
EST: gi|32841437|gb|CD981118.1|CD981118
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|32842117|gb|CD981798.1|CD981798
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGGTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|149037768|gb|EE155430.2|EE155430
EST:     TTGGTTGTGGGGCTGAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|93012264|gb|EB637784.1|EB637784
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAA-G                         ATTAGTGTTTGCTCCCTCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|32850770|gb|CD990451.1|CD990451
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|13316248|gb|BG410695.1|BG410695
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|32841861|gb|CD981542.1|CD981542
EST:     GGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: GGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|76016036|gb|DT943206.1|DT943206
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
EST: gi|32850780|gb|CD990461.1|CD990461
EST:     TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAG                         ATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC
genomic: TTGGTTGTGGGGCTCAAGTAGAGTCCTTAGATGGCTCTCCACCACAAAAGgttatagctt ... tttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttataatcttcaatttatgaattttttactgactcttggtgaactttaatttagATTAGTGTTTGCTCCATCGACAATCCTGTCAATGCATCATTTTTTGAATCCTATGAAAGTGCACACTCCATGCATGATTTGACTGGCTCTATTGCAGAG
     aatcttcaatttatga  TA-rich tract