1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...atgtttatgtttaatttgttgaatgcctacagcttttgttaatacattctcattctcaatttatttcatggcataattgaggtgagtgttctttttgcagAGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGTTGGAAGGGAAATTTTTGGCGACAGAAAACTTTTACCATACTTCAAAGGT
species | Zea mays |
transcript | GRMZM2G152457_T06 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTTCTCTGAGTGTAGATCTGCAGCACTAACACTACTGCAAAAAGGAAATG AGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGT
genomic: CTTCTCTGAGTGTAGATCTGCAGCACTAACACTACTGCAAAAAGGAAATGgtagctgtct ... ctttttgcagAGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGT
attctcattctcaatttatttcatggcataattgaggtgagtgttctttttgcagAGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGTTGGAAGGGAAATTTTTGGCGACAGAAAACTTTTACCATACTTCAAAGGT
tgttcttttt CT-rich tract
attctcaatttattt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| atgtttatgtttaatttgttgaatgcctacagcttttgttaatacattctcattctcaatttatttcatggcataattgaggtgagtgttctttttgcagAGGGATGTACATATCATGAATGCCGCCTTGGAGCAGCATTTGTACCAGAGTTGGAAGGGAAATTTTTGGCGACAGAAAACTTTTACCATACTTCAAAGGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - ttatgtt
- - - - - - - - - -tgaatgc
- - - - - - - - - - - - - ctacagc
- - - - - - - - - - - - - - - - -ttttgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - catggca