1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
...taacttagcttttgtagaaggcgagtaaataatggcagtttcgtttaaggatatgcttgctcaattgctggcagttcaatattagctggttttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAAGCCTCGGAGGTTCAAAACATTTGTAGAAGCATTG
species | Zea mays |
transcript | GRMZM2G152319_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCACTTGATGCAGAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAAEST: gi|71431161|gb|DR812211.1|DR812211
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
EST: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAAEST: gi|93281628|gb|EB673892.1|EB673892
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
EST: TCACTTGATGCNNNNNNNTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGGCTCTGCTTGAGAAATTTAGCTGCAGTGAATCAAACCTGCACCTGAAEST: gi|91048426|gb|EB158844.1|EB158844
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
EST: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAAEST: gi|89762261|gb|DY689939.1|DY689939
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
EST: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTG GTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
genomic: TCACTTGATGCAAAAAACTCCAAGGATACCATTGCTGCTATGCTTCGCTGgtaattgaat ... tttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAA
taaggatatgcttgctcaattgctggcagttcaatattagctggttttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAAGCCTCGGAGGTTCAAAACATTTGTAGAAGCATTG
ttttgat putative branch site (score: 82)
ttcaatatta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| taacttagcttttgtagaaggcgagtaaataatggcagtttcgtttaaggatatgcttgctcaattgctggcagttcaatattagctggttttgatgcagGTGGTCTCTGCTTGAGAAATTTAGCTGCAGTGCATCAAAGCTGCACCTGAAGCCTCGGAGGTTCAAAACATTTGTAGAAGCATTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC