1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtgcgcgagtggtgtggcccttcttcttttgtcctcgcattgcctgtgaatccgcgatcctctgcgactgacgtctgtggctgtggctgtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTGAAGCTACTGATACTGAAGACGCAGGAGAAGAAAAGACGCGTCCAGTTG
species | Zea mays |
transcript | GRMZM2G152135_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211485805|gb|FL428178.1|FL428178
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211062532|gb|FL481127.1|FL481127
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|15554267|gb|BI644265.1|BI644265
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCC-GGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211200344|gb|FL437129.1|FL437129
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|149204930|gb|ES700526.1|ES700526
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|37392032|gb|CF633262.1|CF633262
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGTGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|149107956|gb|EE292313.2|EE292313
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211354968|gb|FL469254.1|FL469254
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211070680|gb|FL369853.1|FL369853
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|211131936|gb|FL382998.1|FL382998
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|60342760|gb|DN209733.1|DN209733
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|148929072|gb|EC874391.2|EC874391
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGGGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTEST: gi|194717072|gb|FK934225.1|FK934225
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
EST: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAG GAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
genomic: ACATGGACAAGTTCGGCGGCGTCCCGTATGGGCTCTTCCTGGGACCAAAGgtgcgcgagt ... gtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGT
ctgtgaatccgcgatcctctgcgactgacgtctgtggctgtggctgtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTGAAGCTACTGATACTGAAGACGCAGGAGAAGAAAAGACGCGTCCAGTTG
gactgac putative branch site (score: 2)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgcgcgagtggtgtggcccttcttcttttgtcctcgcattgcctgtgaatccgcgatcctctgcgactgacgtctgtggctgtggctgtggtttcagGAGCTGGAGGAGGTTGGTGGCCTGGACGAGCTTGTTAGCAGTCCGGTGAGTGAAGCTACTGATACTGAAGACGCAGGAGAAGAAAAGACGCGTCCAGTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
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