Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttattaatctgtgacctttcttgttctatatatttcagtacctgctgagagctgtattctgacttctgggttcatctgtcaactcatttcagTGGGTAGTATTAATCAGAAAACATGCTGAAGTTGTTGTTGGTGACAAAAACGTATTAAAAGTATTCAGAAGACATTGCAAG

Basic information

species Zea mays
transcript GRMZM2G152057_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G152057_T01 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g50040.1 (Oryza sativa), 3'ss of exon 5
--gttattaatctgtgacctttcttgttctatatatttcagtacctgctgagagctgtattctgacttctg----ggttcatctgtcaactcatttcagTGGGTAGTATTAATCAGAAAACATGCTGAAGTTGTTGTTGGTGACAAAAACGTATTAAAAGTATTCAGAAGACATTGCAAG
   |   |||| | |  || |||||||||| | || | |||||  |  |      | ||||| || || |     |   ||||| ||  ||||||||||||||||| ||| | ||||| |||||| ||||| || ||||| ||||||   || ||  ||||||||||||| |||||||||
gtttctgtaatttcttgccattcttgttct-tgtaat-cagtatttcat-----ttttattcagagttttacactgaaccatctatcctctcatttcagTGGGTAGCATTGACCAGAAGACATGCAGAAGTAGTCGTTGGCGACAAACTTGTCTTGCAAGTATTCAGAAGGCATTGCAAG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67024768|gb|CO453517.1|CO453517
EST:     AAAACATGTCTCCTGCCATTCCAAAGGATAAATGGAGGAAAGGATCTCAG                         TGGGTAGTATTAATCAGAAAACATGCTGAAGTTGTTGTTGGTGACAAAAAC
genomic: AAAACATGTCTCCTGCCATTCCAAAGGATAAATGGAGGAAAGGATCTCAGgttattaatc ... ctcatttcagTGGGTAGTATTAATCAGAAAACATGCTGAAGTTGTTGTTGGTGACAAAAAC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtacctgctgagagctgtattctgacttctgggttcatctgtcaactcatttcagTGGGTAGTATTAATCAGAAAACATGCTGAAGTTGTTGTTGGTGACAAAAACGTATTAAAAGTATTCAGAAGACATTGCAAG
                   ttctgac  putative branch site (score: 2)
                                             ctcatttc  putative PPT