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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcatactgttgtgccattgtaattttgtacatgtatttgtttttgacatcatatatttatatgcgagtgtgacatattactttgaaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG

Basic information

species Zea mays
transcript GRMZM2G151268_T03
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|60400202|gb|DN233009.1|DN233009
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|45847355|gb|CN071298.1|CN071298
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|4647161|gb|AI622236.1|AI622236
EST:     ATGAGGAGGGCACCATCAGCATCAG-TGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|21432449|gb|BQ547939.1|BQ547939
EST:     ATGAGGAGGGCCCCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|91049337|gb|EB159755.1|EB159755
EST:     CACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: CACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|23357627|gb|BU645276.1|BU645276
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|60359679|gb|DN226652.1|DN226652
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|32909956|gb|CF014768.1|CF014768
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|78122445|gb|DV540829.1|DV540829
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCNNNNNNNCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|89106102|gb|DY576319.1|DY576319
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|47961828|gb|CN844537.1|CN844537
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATTTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|26557650|gb|CA829885.1|CA829885
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATTTGCCTCCTATGGGGAG                         ACCTATCTCTTTTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|94478768|gb|EB707726.1|EB707726
EST:     CACCCTCAGCATCAGATGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: CACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|60399998|gb|DN232805.1|DN232805
EST:     TCAGCATCATTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTTGCAGCAGGCATCAG
genomic: TCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|211144130|gb|FL475584.1|FL475584
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|12971760|gb|BG267644.1|BG267644
EST:     ATGAGTAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|15323531|gb|BI478753.1|BI478753
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|21809549|gb|BQ667867.1|BQ667867
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|211191649|gb|FL029190.1|FL029190
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCCCCTAT--GGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|211194039|gb|FL029192.1|FL029192
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAR                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|60348471|gb|DN215444.1|DN215444
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|29945211|gb|CB815526.1|CB815526
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
EST: gi|211191650|gb|FL029191.1|FL029191
EST:     ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAG                         ACCTATCTCTTCTTCGCAGCAGGCATCAG
genomic: ATGAGGAGGGCACCATCAGCATCAGTTGGGAATCTGCCTCCTATGGGGAGgtaagcatac ... aaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tttttgacatcatatatttatatgcgagtgtgacatattactttgaaattggcagACCTATCTCTTCTTCGCAGCAGGCATCAG
 ttttgac  putative branch site (score: 3)
      acatcatatatttata  TA-rich tract