1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...tgactccacaaaccaaacataccattagttctttagatatttccagcacactatattagattcaatttatgtttgcttactaagtctttcttaacctcagGTACTCCAAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
species | Zea mays |
transcript | GRMZM2G150496_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TATCACTGCTGATGCCGCTCTTCTAATAGCAGACCACTCTTTATTCTCTG GTACTCCAAAGGGTAGCAGCTGCEST: gi|71442788|gb|DR823838.1|DR823838
genomic: TATCACTGCTGATGCCGCTCTTCTAATAGCAGACCACTCTTTATTCTCTGgtacatactt ... ttaacctcagGTACTCCAAAGGGTAGCAGCTGC
EST: TATCACTGCTGATGCCGCTCTTCTAATAGCAGACCACTCTTTATTCTCTG GTACTCCAAAGGGTAGCAGCTGCATAGCTGTEST: gi|71433918|gb|DR814968.1|DR814968
genomic: TATCACTGCTGATGCCGCTCTTCTAATAGCAGACCACTCTTTATTCTCTGgtacatactt ... ttaacctcagGTACTCCAAAGGGTAGCAGCTGCATAGCTGT
EST: TATCACTGCTGATGCCGCTCTTCTAATAGCAGACCACTCTTTATTCTCTG GTACTTCAAAGGGTAGCAGCT
genomic: TATCACTGCTGATGCCGCTCTTCTAATAGCAGACCACTCTTTATTCTCTGgtacatactt ... ttaacctcagGTACTCCAAAGGGTAGCAGCT
gcacactatattagattcaatttatgtttgcttactaagtctttcttaacctcagGTACTCCAAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
tcttaac putative branch site (score: 32)
tctttcttaacctc CT-rich tract
tatattagattcaatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgactccacaaaccaaacataccattagttctttagatatttccagcacactatattagattcaatttatgtttgcttactaagtctttcttaacctcagGTACTCCAAAGGGTAGCAGCTGCATAGCTGTAGAGATAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - -ccacaaa
- - - - - - - - -catacca
- - - - - - - - - - - - - - - - - - - - - ccagcac
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgtttgc