1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgcatagttctgattcctgaatcttgttcccatcgcttttattggcagtgatgcacctttactttccaaggcttattgctgctctccttggtcgattgcccttcgttgtacatttttttgtttctgttgttttcttttctcttctaaaaaagtataaaatgatccactgagatatcttcctctgcaaatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAGTATCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTT
species | Zea mays |
transcript | GRMZM2G150209_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|149105392|gb|EE290900.2|EE290900
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|149076762|gb|EE165408.2|EE165408
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|71763175|gb|DR961112.1|DR961112
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|6469019|gb|AW191795.1|AW191795
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: CTCAAACCAAGAAGGAAATCAGT GAAATTTCATGGCNCAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|67023920|gb|CO452669.1|CO452669
genomic: CTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|87156906|gb|DY401695.1|DY401695
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|110963433|gb|EE183333.1|EE183333
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|5325088|gb|AI783279.1|AI783279
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATCAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|5846898|gb|AI999981.1|AI999981
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATCAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|22133528|gb|BQ833762.1|BQ833762
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|76916674|gb|DV166495.1|DV166495
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|91870113|gb|EB400708.1|EB400708
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|78084663|gb|DV513056.1|DV513056
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAACCCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTCCCAGCTAGTGATGATGCAEST: gi|74238912|gb|DT646826.1|DT646826
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|60291833|gb|DN190072.1|DN190072
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACGTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|78087169|gb|DV515562.1|DV515562
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|211134459|gb|FL464550.1|FL464550
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|18383494|gb|BM416694.1|BM416694
genomic: GCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|211233125|gb|FL455326.1|FL455326
genomic: GCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: CAAGAAGGAAATCAGT GAAATTTCATGGCACAGAATTGACGACCTCTTACCAGCTAGTGATGATGCAEST: gi|78087974|gb|DV516367.1|DV516367
genomic: CAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACGGGGTTTGCACCTCAAACCAAGAGGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|78104490|gb|DV522908.1|DV522908
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|94475807|gb|EB704765.1|EB704765
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|78122727|gb|DV541111.1|DV541111
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|18383699|gb|BM416899.1|BM416899
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: CAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAEST: gi|5566698|gb|AI881714.1|AI881714
genomic: CAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
EST: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGT GAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
genomic: GGGTTAAAAGAGACACTGTGTTTGCACCTCAAACCAAGAAGGAAATTAGTgtatgcatag ... aatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCA
ttctaaaaaagtataaaatgatccactgagatatcttcctctgcaaatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAGTATCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTT
ttctaaa putative branch site (score: 2)
aaaaagtataaaatga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgcatagttctgattcctgaatcttgttcccatcgcttttattggcagtgatgcacctttactttccaaggcttattgctgctctccttggtcgattgcccttcgttgtacatttttttgtttctgttgttttcttttctcttctaaaaaagtataaaatgatccactgagatatcttcctctgcaaatctgttagGAAATTTCATGGCACAGAATTGATGACCTCTTACCAGCTAGTGATGATGCAGTATCTCGTGCAGTGAATGGAATGAAGCTGTACATGGTTGCGCCATTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG