1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
gttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
species | Zea mays |
transcript | GRMZM2G149994_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAG AAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTEST: gi|67026000|gb|CO454749.1|CO454749
genomic: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatt ... tgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
EST: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAG AAAGAGCTTCAGAAAGCTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTEST: gi|24934696|gb|CA452914.1|CA452914
genomic: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatt ... tgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
EST: TGAAAGATCTAAAG -AAGAGCTTCAGAAAGCTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTEST: gi|67018676|gb|CO447425.1|CO447425
genomic: TGAAAGATCTAAAGgttaggcatt ... tgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
EST: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAG AAAGAGCTTCAGAAAGCTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTEST: gi|33092600|gb|CF052594.1|CF052594
genomic: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatt ... tgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
EST: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAG AAAGAGCTTCAGAAAGCTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTEST: gi|24773164|gb|CA408418.1|CA408418
genomic: AAATTTCAATTGTTTCGTGGGATGATATAGGAGGCTTGAAAGATCTAAAGgttaggcatt ... tgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
EST: AAGATCTAAAG AAAGAGCTTCAGAAAGCTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
genomic: AAGATCTAAAGgttaggcatt ... tgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTT
ttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
ttttgat putative branch site (score: 4)
aaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttaggcatttcttgttttggctcccttctggcaaaaaacctgttttgatggtgattgttcatgtgctccagAAAGAGCTTCAGAAAGTTGTTGAATGGCCCATCAAGCATGCTGCTGCATTTTCTAGACTTGGAATACCACCAGTCCGGGGGGTGCTGTTGCATGGCCCAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT