Sequence
atgc intronic sequence ATGC exonic sequence...atgtttaaactttatttaaacgtttaagagtcaaaacttcacccatgagcgtttcaccgttttatagatttaataaccttggcaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTGTCAGCAGACTAGAAAGGGAGTCTGGGGTTAAATTTGAGCATATCTCTGC
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G149520_T02 (Zea mays), 3'ss of exon 9
lower sequence: LOC_Os09g34910.1 (Oryza sativa), 3'ss of exon 9
atgtttaaactttatttaaacgtttaagagtcaaaacttcacccatgagcgtttcaccgttttatagatttaataaccttggcaatca--tttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTGTCAGCAGACTAGAAAGGGAGTCTGGGGTTAAATTTGAGCATATCTCTGC
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-----------------------gtaggagtaa----ttcggttactatattttttctgctt-atgatggttaccttctaagcaatgtgttttgattttcagGCAATACTGGTGTTGCTGTCATGCTTTTTGAACCCAGATATAAGTTCAATGTGAACAGAATAGAAAGGGAGTCTGGGGTCAAATTTGAACATATCTCTGC
upper sequence: GRMZM2G149520_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA10G38680.1 (Glycine max), 3'ss of exon 9
atgtttaaactttatttaaacgtttaagagtcaaaacttcacccatgagcgtttcaccgtt-ttatagatttaa--taaccttggcaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTGTCAGCAGACTAGAAAGGGAGTCTGGGGTTAAATTTGAGCATATCTCTGC---
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---------gtatttctacaggatttgctattgg--cttactatgggattgtgatattggagttatcgatttaaggttatactgtggttttgtttttattcagGTAATACTGGGGTTGCTGTCATGCTTTATGATCCAAAA---AGATCTAACATACCTAGAATAGAAAGAGAGTCCGGTGTAAAATTTGAACACGTATCCGCCCC
upper sequence: GRMZM2G149520_T02 (Zea mays), 3'ss of exon 9
lower sequence: GLYMA20G29060.1 (Glycine max), 3'ss of exon 9
atgtttaaactttatttaaacgtttaagagtcaaaacttcacccatgagcgtttcaccgttttatagatttaataaccttggcaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTGTCAGCAGACTAGAAAGGGAGTCTGGGGTTAAATTTGAGCATATCTCTGC---
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-----gtatctttacaggatttgctattggtttactattgtgatattggagtt--attgattttaaggtt--ata-ctgtggt--ttggtttttattcagGTAATACTGGGGTTGCTGTTATGCTTTATGA-CCCAAAAAGATCGAACATATC--TAGAATAGAGAGAGAGTCTGGTGTAAAATTTGAACACGTATCTGCTCCMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|31353684|gb|CD438041.1|CD438041EST: CCGGGATGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAG GTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTG
genomic: CCGGGATGTTGAAGCTTACATACACCGGTCAGGTCGGACAGGGAGAGCAGgtatactaaa ... tgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTG
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.tgagcgtttcaccgttttatagatttaataaccttggcaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTGTCAGCAGACTAGAAAGGGAGTCTGGGGTTAAATTTGAGCATATCTCTGC
ttttc CT-rich tract
ttttatagatttaata TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
atgtttaaactttatttaaacgtttaagagtcaaaacttcacccatgagcgtttcaccgttttatagatttaataaccttggcaatcatttgattttcagGTAATACTGGTGTTGCTGTCATGCTTTATGAGCCCAGATATAAGCACAGTGTCAGCAGACTAGAAAGGGAGTCTGGGGTTAAATTTGAGCATATCTCTGC
- - - - - - - - - - - - - - - - - - cttcacc
- - - - - - - - - - - - - - - - - - - - - -catgagc