1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gatctggataaccaaatgctcttcttaacatttttttgagtttgttggcatgctctgaataactaataagcttttgatttgacccccgcgcgcggtgcagAACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTACATGATCAACGCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCT
species | Zea mays |
transcript | GRMZM2G149481_T04 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TCCCGGCGCTGGCGCACATGATCACGTTCCGGTCCGCAACAGCCCGTGAG AACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTACEST: gi|88746179|gb|DY530320.1|DY530320
genomic: TCCCGGCGCTGGCGCACATGATCACGTTCCGGTCCGCAACAGCCCGTGAGgtagtatatt ... cgcggtgcagAACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTAC
EST: TCCCGGCGCTGGCGCACATGATCACGTTCCGGTCCGCAACACCCCGTGAG AACGCTATGGACCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTACEST: gi|93283638|gb|EB675902.1|EB675902
genomic: TCCCGGCGCTGGCGCACATGATCACGTTCCGGTCCGCAACAGCCCGTGAGgtagtatatt ... cgcggtgcagAACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTAC
EST: TCCCGGCGCTGGCGCACATGATCACGTTCCGGTCCGCAACAGCCCGTGAG AACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTAC
genomic: TCCCGGCGCTGGCGCACATGATCACGTTCCGGTCCGCAACAGCCCGTGAGgtagtatatt ... cgcggtgcagAACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTAC
tggcatgctctgaataactaataagcttttgatttgacccccgcgcgcggtgcagAACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTACATGATCAACGCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCT
tgaataactaataa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gatctggataaccaaatgctcttcttaacatttttttgagtttgttggcatgctctgaataactaataagcttttgatttgacccccgcgcgcggtgcagAACGCGATGGAGCCGCCGCCGCGGCTGCTGGGGCGTTGGACGGGCGCGTACATGATCAACGCGTTCGTGGTGGCGTGGGTGCTGGTGGTCGGCTTCGGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - caaatgc
- - - - - - - - - - - - - - - - - - - - - - - ggcatgc
- - - - - - - - - - - - - - - - - - - - - - - - - - -tctgaat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gcttttg