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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atcaaagcagtactagcaattaattgaaaggtgactggactgaacgaacagcatcaacagtaattagtaatggtttgcacgcatatatatatacacgcagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC

Basic information

species Zea mays
transcript GRMZM2G149481_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G149481_T04 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os03g14080.1 (Oryza sativa), 3'ss of exon 5
--atcaaagcagt-actagcaattaattgaaaggtgactggactgaacgaacagcatcaacagtaattagtaatggt-ttgcacgcatatatatatacacgcagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC
   | | | |  |   |  ||      | ||   ||     | ||| | ||| |  |||| || | || || |     || |  |   || |   | | ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
cagttacatcgatcgtttacagcagcgtcaatactgtaataattgaccaaactg--tcaa-agcagtttgtgacaacattacgtgtg-attttggtgcgcgcagGGAGATCATGCACGCGATGTGGAGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCGAGC

upper sequence: GRMZM2G149481_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA11G11310.1 (Glycine max), 3'ss of exon 5
atcaaagcagtactagcaattaattgaaaggtgactggactgaacgaacagcatcaacagtaattag-taatggtttgcacgca---tatatatatacacgcagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC-
      |   | ||   ||||||||      |     ||   |   |   |  |    |||||| ||  ||   | |  | |     | ||    ||    ||||||||| |||||||||||||||  ||| || |||||||||||  | ||| |  |||| || ||||| |||||||| |||||||| || ||||| || ||| 
----gtgatatgctgctaattaattagttaattttgagagaaatgaagttggctagctagtaatgagacaaatatattaatgagaattgtactggtaacaccagGGAGATAATGCACGCGATGTGGAAGCCTCAAAAGTTCAAGGCCTTATACTTACTGGCAACCCTGTATGTGCTGACACTGACGCTTCCATCGGCAGC-AGCA

upper sequence: GRMZM2G149481_T04 (Zea mays), 3'ss of exon 4
lower sequence: GLYMA12G03490.1 (Glycine max), 3'ss of exon 5
atcaaagcagtactagcaatt--aattgaaaggtgactggactgaacgaacagcatcaacagtaattagtaatggtttgcacgcatatatatatacacg-cagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC-
||  |   | |   |||  ||  |||||    |  |    ||| |   |  ||  || | ||||      ||   | |  | | |||  | ||       ||||||||| |||||||||||||||  ||| || |||||||||||  | ||| |  |||| || ||||| |||||||| |||||||| || ||||| || ||| 
attta--taatttaagcttttgcaattgtggtgatatgctactaattaattagtttcgagagtataagacaaatatattaatg-atacttgtactggtaacagGGAGATAATGCACGCGATGTGGAAGCCTCAAAAGTTCAAGGCCTTATACTTACTGGCAACCCTGTATGTGCTGACACTGACGCTTCCATCGGCAGC-AGCA

upper sequence: GRMZM2G149481_T04 (Zea mays), 3'ss of exon 4
lower sequence: EFJ34222 (Selaginella moellendorffii), 3'ss of exon 5
atcaaagcagtactagcaattaattgaaaggtgactggactgaacgaacagcatcaacagtaattagtaatggtttgcacgcatatatatatacacgcagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC-
                                |  |   ||       | |      ||   ||   ||    | | | |  | |  |  ||   | |||||||||||||||||||||||||  ||| || |||||||||  | |||| ||  | || ||  | |||||  | ||  |||| || ||||| ||  |  || 
----------------------------gtaagctttcgcttctttcgctgttcttgcatggatcgataggcatcttctcataaactttgatcttcccagGGAGATCATGCACGCGATGTGGAAGCCCCAAAAGTTCAAGTGGGTCTATCTCGTCGCTACCATCTACGTCTTCACCTTGACACTCCCGTCCGCCAC-GGCA

upper sequence: GRMZM2G149481_T04 (Zea mays), 3'ss of exon 4
lower sequence: EFJ21839 (Selaginella moellendorffii), 3'ss of exon 5
atcaaagcagtactagcaattaattgaaaggtgactggactgaacgaaca-gcatcaacag--taattagtaatggtttgcacgcatatatatatacacgcagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC-
                    |||      | |   |   |||  |   || | ||| | ||  ||  | || ||  ||| | |  | |  |  ||   | |||||||||||||||||||||||||  ||| || |||||||||  | |||| ||  | || ||  | |||||  | ||  |||| || ||||| ||  |  || 
-------------------gtaagctttcgcttctttcgctgttcttgcatggatcgataggctatgttgtcatc-ttttctcataaactttgatcttcccagGGAGATCATGCACGCGATGTGGAAGCCCCAAAAGTTCAAGTGGGTCTATCTCGTCGCTACCATCTACGTCTTCACCTTGACACTCCCGTCCGCCAC-GGCA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gaacagcatcaacagtaattagtaatggtttgcacgcatatatatatacacgcagGGAGATCATGCACGCGATGTGGCGGCCGCAGAAGTTCAAGGCGATCTACCTGATGGCGACGCTGTACGTGCTGACGCTGACGCTGCCGTCGGCGGCCAGC
                                     atatatatataca  TA-rich tract