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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcgattctccccttttcatcagcaacatcacatctcctagctagagagaattcacgctcaatctttaccctgcatgcgtcctcttcgtccagCCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAGGTCTCGGTGAGTGTGACGACCCAAGGGGCCGTGGCGGCGCACAAGCATG

Basic information

species Zea mays
transcript GRMZM2G148167_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G148167_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os06g08090.2 (Oryza sativa), 3'ss of exon 8
gtaagcgattctccccttttcat-cagcaacatcacatctcctagctagagaga--attcac--gctcaatctttaccctgcatgcgtcctcttcgtccagCCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAGGTCTCGGTGA-GTGTGACGACCCAAGGGGCCGTGGCGGCGCACAAGCATG
|||||| || |          || ||    ||||| | |    |   | | |    ||  ||   || ||||| | | |    |    | |    || ||||||||||| || |||||||||||||| ||||| ||||||||||| |  || || || ||||   |||| |   |    | |     | | | | |||||| 
gtaagcaatccagaaaacccaatgcattttcatcagaacaatgaaaaaaaaaactcatctactaactgaatctatgctcaatctcttccttgcaagttcagCCAGGAATAACACTACTGCTGATCAACCTCAGTGGCAACACCACAAGCCAAGTTTCAGTGACAAGTGAAGGTGCTCATG-CAAACACTGTGAAGAAGCATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211483830|gb|FL460428.1|FL460428
EST:     TCAGCGGCACGAACAAGATCCGCGCATACGCACACTGCGCAAGAGATTCA                         CCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAG
genomic: TCAGCGGCACGAACAAGATCCGCGCATACGCACACTGCGCAAGAGATTCAgtaagcgatt ... cttcgtccagCCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAG
EST: gi|211225097|gb|FL464250.1|FL464250
EST:     AGCGGCACGAACAAGATCCGCGCATACGCACACTGCGCAAGAG-TTCA                         CCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAA
genomic: AGCGGCACGAACAAGATCCGCGCATACGCACACTGCGCAAGAGATTCAgtaagcgatt ... cttcgtccagCCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAG


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tagctagagagaattcacgctcaatctttaccctgcatgcgtcctcttcgtccagCCAGGAATCACTCTACTGCTGATCAATCTCAGCGGCAACACCACGACGCAGGTCTCGGTGAGTGTGACGACCCAAGGGGCCGTGGCGGCGCACAAGCATG
                                       cgtcctcttcgtcc  CT-rich tract
                      aatcttta  TA-rich tract