1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...gtgctagtcgaaacataaatgcactgcctggagatgtacctatcagtgcatacattaactgaactccattttcacactgttttctgttctctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAACTTTTTACAAGCTGACACACCCTCTGGACAAATCATGGCATGTGCTTG
species | Zea mays |
transcript | GRMZM2G147145_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|148962191|gb|EE013006.2|EE013006
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|60396687|gb|DN229554.1|DN229554
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|67019228|gb|CO447977.1|CO447977
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAATAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|60347201|gb|DN214174.1|DN214174
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|32849365|gb|CD989046.1|CD989046
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTCCCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|76018864|gb|DT946034.1|DT946034
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|51592296|gb|CV071442.1|CV071442
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|60345745|gb|DN212718.1|DN212718
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|211198454|gb|FL128767.1|FL128767
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGTAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|149081488|gb|EE170623.2|EE170623
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAEST: gi|71312998|gb|DR793023.1|DR793023
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
EST: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATG AACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
genomic: AATGGAAGAAGAAAGACATTACTGGAATTTACCACAAATGGCAGAACATGgtgagttgga ... ctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTA
gtgcatacattaactgaactccattttcacactgttttctgttctctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAACTTTTTACAAGCTGACACACCCTCTGGACAAATCATGGCATGTGCTTG
cattaac putative branch site (score: 2)
ctgttttctgttctct putative PPT
tacattaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgctagtcgaaacataaatgcactgcctggagatgtacctatcagtgcatacattaactgaactccattttcacactgttttctgttctctttgtacagAACGAGAACAGGCTGCTCTGGAAACTGGGGACATTGCCACCAGGGCTTCTAACTTTTTACAAGCTGACACACCCTCTGGACAAATCATGGCATGTGCTTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA