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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...aattatctataagtcttcttaaaagttactgccgctcttgaaccattttttagtttccatgtaatttatgaatcattattatttttttccaaatttgtagGCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCTGCTCAATACTATACTGGCTCACGCCAAAGTGGTACTAGTATAGGCGATC

Basic information

species Zea mays
transcript GRMZM2G146514_T03
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146514_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os11g28270.1 (Oryza sativa), 3'ss of exon 5
aattatctataagtcttcttaaaagttactgccgctcttgaaccattttt-tagtttccatgtaatttatg-aatcattattatttttttccaaatttgtagGCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCTGCTCAATACTATACTGGCTCACGCCAAAGTGGTAC---TAGTATAGGCGATC
 || || ||    |    ||||  |||  |   |   |   | ||||| | ||| || ||||| |  ||||  ||   |    | |||||     ||  ||||| |||||||||||||||||||| || || |||||  ||||| |||||| ||| |||||||||||||||||||| || ||||  ||   ||  || || |   
-atcatttacct-tgagattaattgttgattttgtcgtgccatcatttctgtagctttcatgtcaaatatgtgattgctcaactatttttatgttttcttagGCACAAATTGGTTCTTCATCCTCAGACGATCAACAGAGGACAGCTGGAGGTGCACAATACTATACTGGCTCACGTCACAGTGAAACACCTAACATGGGTG---
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|37423927|gb|CF649693.1|CF649693
EST:     TGATTGTTCCTCCCGGGCTTGTTCAAGTCCCAGGGTGGAGTCCTTATACT                         GCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCT
genomic: TGATTGTTCCTCCCGGGCTTGTTCAGGTCCCAGGGTGGAGTCCTTATACTgtatgttctc ... aaatttgtagGCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttttttagtttccatgtaatttatgaatcattattatttttttccaaatttgtagGCGCAAATTGGTTCTTCATCCTCGGAGGACCAACAACGGACACCTGGAGCTGCTCAATACTATACTGGCTCACGCCAAAGTGGTACTAGTATAGGCGATC
                                    tttttttcca  CT-rich tract
             atgtaatttatgaatc  TA-rich tract