1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ataagccatatcttcgagcactactttgttcatcattggtcaaatatgtttgtgcaatattgacaccaaggtgacaacttgctctcacatgcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGACAAGTCCAGTGACGAAGAGCTTAGCGATGACGACGACGACGACAACGA
species | Zea mays |
transcript | GRMZM2G146374_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|32850027|gb|CD989708.1|CD989708
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|60400981|gb|DN233788.1|DN233788
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|31364283|gb|CD448638.1|CD448638
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|38229847|gb|CF920160.1|CF920160
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCCAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|32911553|gb|CF016365.1|CF016365
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACEST: gi|34391369|gb|CF384597.1|CF384597
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGAC
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|4217768|gb|AI391764.1|AI391764
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|32943661|gb|CF048480.1|CF048480
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|33285782|gb|CF075577.1|CF075577
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|71325319|gb|DR799337.1|DR799337
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGACGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|4217837|gb|AI391833.1|AI391833
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|32856672|gb|CD996353.1|CD996353
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|4573150|gb|AI438501.2|AI438501
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|211477511|gb|FL096882.1|FL096882
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|4217951|gb|AI391947.1|AI391947
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|33771123|gb|CF272784.1|CF272784
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|38229799|gb|CF920112.1|CF920112
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|211073944|gb|FL168133.1|FL168133
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAACACTGATGATGCGTGATCGGCCTGTTTATGACCAGAAAGTGAAGG A-TATTGTGAAAAGTATGCTAAACCAGAAGACGCTGGCATCACCCCGGAAGEST: gi|71432138|gb|DR813188.1|DR813188
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|71769127|gb|DR967064.1|DR967064
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|83278687|gb|DV942695.1|DV942695
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|211477514|gb|FL096885.1|FL096885
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|4217937|gb|AI391933.1|AI391933
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|32856738|gb|CD996419.1|CD996419
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|211536461|gb|FL178300.1|FL178300
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG A-TNATTGTGAAAAGTATGCTAAACCCAGAG-ACGCTGGCATCACCCCGGAEST: gi|16925233|gb|BM078301.1|BM078301
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAAT-ATTGTGAAAAGTATGCTAAACC-AGAGGACGCTGGCATCACCCCGGA
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|211073943|gb|FL168132.1|FL168132
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|32912993|gb|CF017805.1|CF017805
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGNGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|78082922|gb|DV511315.1|DV511315
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|4217817|gb|AI391813.1|AI391813
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAACCCAGAGGACGCTGGCATCTCCCCGGAAGEST: gi|211536459|gb|FL178298.1|FL178298
genomic: TGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACEST: gi|211073941|gb|FL168130.1|FL168130
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCAC
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGEST: gi|211477513|gb|FL096884.1|FL096884
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
EST: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAG AATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
genomic: TGCAGCACTGATGATGCGTGATCGGCCTGTTTATGAACAGAAAGTGAAAGgtacagtgct ... gcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAG
atgtttgtgcaatattgacaccaaggtgacaacttgctctcacatgcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGACAAGTCCAGTGACGAAGAGCTTAGCGATGACGACGACGACGACAACGA
tgcttct CT-rich tract
aatattga TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ataagccatatcttcgagcactactttgttcatcattggtcaaatatgtttgtgcaatattgacaccaaggtgacaacttgctctcacatgcttctgcagAATATTGTGAAAAGTATGCTAAACCAGAGGACGCTGGCATCACCCCGGAAGACAAGTCCAGTGACGAAGAGCTTAGCGATGACGACGACGACGACAACGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - -gcactac
- - - - - - - - - - - - - -gttcatc
- - - - - - - - - - - - - - - - - - - - - - - tgtttgt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gacacca