Skip to another splice site:
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 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatttctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG

Basic information

species Zea mays
transcript GRMZM2G146206_T04
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g62420.3 (Oryza sativa), 3'ss of exon 5
cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaattt-----ctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG-----
  |  |    |||  ||||   |  |||       || || ||    | ||||| | ||      | |||| |   ||| |  |    ||| |  | |||| |||| || ||||| |||||||| ||| |||| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||     
--tctttatggct--tttgtggtccattgtactgtgctgacatagaagtcttctcatttctccacccctaactttttgtctttt-ttactcgtcatatttttcagAGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAGGTATT

upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os01g62420.5 (Oryza sativa), 3'ss of exon 4
cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatt-----tctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
  |  |    |||  ||||   |  |||       || || ||    | ||||| | ||      | |||| |   ||| |  |    ||| |  | |||| |||| || ||||| |||||||| ||| |||| ||||||||||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||||
--tctttatggct--tttgtggtccattgtactgtgctgacatagaagtcttctcatttctccacccctaactttttgtctttt-ttactcgtcatatttttcagAGAAGATATCCGATTGGACCAATGTTGTTTTGGCATATGAACCAGTTTGGGCCATTGGAACCGGCAAGGTTGCAACCCCTGCTCAGGCTCAGGAG

upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA13G41120.1 (Glycine max), 3'ss of exon 5
cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatttctctaattcactgtttactgcctctccttttgt---tttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
  |   |    ||| | | |   ||  |    ||       ||        |    ||||   ||     || | |  |  ||  ||||  ||   |||||||  ||||||||| |||||   ||| | || ||||| ||||| ||||||||||| ||||| || || || ||||||||||||||||||||||| |||
gttaaaaaaaactgttctaa---ttgctttaacagattatcatctcatcacttgctattttgttagcaatctatattttcgctgaccttaagtgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTATGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCAACTCCTGCTCAGGCTCAAGAG

upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G04290.2 (Glycine max), 3'ss of exon 5
------------------------------------------------------------------------------cattctagctgctgctttgaa----------ttttattccttcacgcagaaatgagggacttctga------atttctctaattcactgtttactgcctctcctt--ttgt-tttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG-----
                                                                              | ||   | |  || ||  ||            | ||| ||| |       || |    ||  | |      ||||   ||     || | |  |  ||  ||||  |||| |||||||  ||||||||| |||||   ||| | || ||||| || || ||||||||||| ||||| || || || ||||| ||||||||||||||||| |||     
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAGGTATG

upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
lower sequence: GLYMA15G04290.1 (Glycine max), 3'ss of exon 5
------------------------------------------------------------------------------cattctagctgctgctttgaa----------ttttattccttcacgcagaaatgagggacttctga------atttctctaattcactgtttactgcctctcctt--ttgt-tttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
                                                                              | ||   | |  || ||  ||            | ||| ||| |       || |    ||  | |      ||||   ||     || | |  |  ||  ||||  |||| |||||||  ||||||||| |||||   ||| | || ||||| || || ||||||||||| ||||| || || || ||||| ||||||||||||||||| |||
gtaccttttttctccgtatatacaggtttaattttctgcgtattcattaagtcgtgtttttatctcagatttggaggtctttgctgttcttgtttaaaaaaaaaaaattcctaattgctttaacagattatcattatctcatcacttgctattttgttagcaatctatattttcgctgaccttaattgtatttgcagCTAAAATATCAAATTGGGACAATGTCGTTTTGGCCTACGAGCCAGTTTGGGCCATTGGAACAGGAAAGGTTGCTACTCCTGCTCAGGCTCAAGAG

upper sequence: GRMZM2G146206_T02 (Zea mays), 3'ss of exon 5
lower sequence: Vv06s0004g04800.t01 (Vitis vinifera), 3'ss of exon 5
-cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatttctctaattcactgtttactgcctctcc-ttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
  |    |  |  |  || |     ||| ||||    |  |  ||   |  ||||  ||      |  |   || | | |   |  |  |||| | || |||||||| | |||   |||   |||||||| ||||| |||||||| |||||||| ||||| || || || |||||||| ||||||||||| ||||| 
ctacatgaatttgtaatt-gtgccatatcccttttttct-agctgtatgtgttctctatgaacggatatgtttgatgaataatttgctattttctctttcagAAAAAGTGTCAAGCTGGGATAATATTGTTTTGGCTTATGAACCTGTTTGGGCCATTGGCACTGGAAAGGTTGCAACCCCTGCTCAGGCACAGGAA

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|16919933|gb|BM074427.1|BM074427
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|6021382|gb|AW066310.1|AW066310
EST:     GGCAGGAACAACAATGGATGTTGNTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATT
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATT
EST: gi|150037302|gb|DY843516.1|DY843516
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|38568995|gb|CF974880.1|CF974880
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|14243822|gb|BG841520.2|BG841520
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|67021888|gb|CO450637.1|CO450637
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATGTTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|24767602|gb|CA402746.1|CA402746
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|149005098|gb|EE039627.2|EE039627
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|24769561|gb|CA404690.1|CA404690
EST:     AATGGATGTTGTTGCTGCCCAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: AATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|149097485|gb|EE183357.2|EE183357
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|30591364|gb|CD052336.1|CD052336
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|71330644|gb|DR802095.1|DR802095
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|38229733|gb|CF920046.1|CF920046
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|16927318|gb|BM080387.1|BM080387
EST:     AGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: AGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|32851161|gb|CD990842.1|CD990842
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|149105683|gb|EE291241.2|EE291241
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|149095398|gb|EE181040.2|EE181040
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|74242319|gb|DT650233.1|DT650233
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAA-TATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTTGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTT-GG
EST: gi|71436570|gb|DR817620.1|DR817620
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|31352539|gb|CD436896.1|CD436896
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|149097486|gb|EE183358.2|EE183358
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|149005099|gb|EE039628.2|EE039628
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|28566674|gb|CB278322.1|CB278322
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTT
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTT
EST: gi|37361179|gb|CF602468.1|CF602468
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|148971477|gb|EE022172.2|EE022172
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         NNNNNNNTATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAA-TATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGG
EST: gi|37361339|gb|CF602628.1|CF602628
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|34391231|gb|CF384459.1|CF384459
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|28188261|gb|CB179871.1|CB179871
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|6012502|gb|AW061939.1|AW061939
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|110517584|gb|EE022171.1|EE022171
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         N
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcag-
EST: gi|110517584|gb|EE022171.1|EE022171
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         N
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcag-
EST: gi|71757929|gb|DR955866.1|DR955866
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|78077610|gb|DV506044.1|DV506044
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|33770896|gb|CF273190.1|CF273190
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|148995363|gb|EE034577.2|EE034577
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|32909130|gb|CF013942.1|CF013942
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|33770918|gb|CF273212.1|CF273212
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|211405784|gb|FL400096.1|FL400096
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAA-TATCAGAT
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGAT
EST: gi|67017127|gb|CO445876.1|CO445876
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATGTTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|211291624|gb|FL459848.1|FL459848
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGNATGTGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|31360263|gb|CD444620.1|CD444620
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|71330645|gb|DR802096.1|DR802096
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|148995362|gb|EE034576.2|EE034576
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|37361129|gb|CF602418.1|CF602418
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|34391269|gb|CF384497.1|CF384497
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|31351356|gb|CD435713.1|CD435713
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|83278303|gb|DV942311.1|DV942311
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|33771263|gb|CF273442.1|CF273442
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|38229553|gb|CF919866.1|CF919866
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|76928137|gb|DV171503.1|DV171503
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|31354853|gb|CD439210.1|CD439210
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|61118911|gb|DN559872.1|DN559872
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|16927255|gb|BM080324.1|BM080324
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|18178250|gb|BM379460.1|BM379460
EST:     ATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: ATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|211247588|gb|FL403551.1|FL403551
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTG
EST: gi|67015285|gb|CO444034.1|CO444034
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATGTTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|211123868|gb|FL376717.1|FL376717
EST:     AGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAA-TATCAGA
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGA
EST: gi|211297519|gb|FL438922.1|FL438922
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|211504304|gb|FL391671.1|FL391671
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|211398253|gb|FL405436.1|FL405436
EST:     GCAGGAAACA-CAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAA-TATCA
genomic: GCAGGAA-CAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCA
EST: gi|31628067|gb|CD526427.1|CD526427
EST:     GGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
EST: gi|33770853|gb|CF273147.1|CF273147
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAA-TATCA
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCA
EST: gi|110960987|gb|EE181039.1|EE181039
EST:     GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTG                         AAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG
genomic: GGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 53

CAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 106

CAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG


Block sizes: 48 (upstream exon), 49 (downstream exon)
Score: 50

CAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 345

CAAGGTCTCAAGGTAATTGCTTGCATTGGTGAGACCCTTGAGCAGAGAGAGGCAGGAACAACAATGGATGTTGTTGCTGCACAAACAAAGGCTATTGCTGgtaactttta ... tgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gggacttctgaatttctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG
               ctctaat  putative branch site (score: 345)
                            tttactgcctctcctt  putative PPT
                                          ttttgtttt  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
cattctagctgctgctttgaattttattccttcacgcagaaatgagggacttctgaatttctctaattcactgtttactgcctctccttttgttttgcagAAAAAATATCAGATTGGACAAATATTGTGTTGGCATATGAACCAGTTTGGGCTATTGGTACCGGCAAAGTTGCAACTCCTGCTCAGGCTCAGGAG

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GCAAAG