1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtctggccgcaccgtgccttggattcagagatttttcagcgaccatgaagatgcttttttaggccgagtgatatcctatcctttttcagcattgaagttcttcctcgtgactaattttgtttatttttttgttaccaccgcaacctacagTCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTACTTGTTCAAAAAG
species | Zea mays |
transcript | GRMZM2G145895_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CTGAAGAAGCAGAGCTGTTCAAATATCCTTTCCCATATCTTTACGATGAG TCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTACEST: gi|17932515|gb|BM269475.1|BM269475
genomic: CTGAAGAAGCAGAGCTGTTCAAATATCCTTTCCCATATCTTTACGATGAGgtctggccgc ... caacctacagTCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTAC
EST: CTGAAGAAGCAGAGCTGTTCAAATATCCTTTCCCATATCTTTACGATGAG TCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTACEST: gi|76290298|gb|DV029866.1|DV029866
genomic: CTGAAGAAGCAGAGCTGTTCAAATATCCTTTCCCATATCTTTACGATGAGgtctggccgc ... caacctacagTCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTAC
EST: CTGAAGAAGCAGAGCTGTTCAAATATCCTTTCCCATATCTTTACGATGAG TCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTAC
genomic: CTGAAGAAGCAGAGCTGTTCAAATATCCTTTCCCATATCTTTACGATGAGgtctggccgc ... caacctacagTCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTAC
agttcttcctcgtgactaattttgtttatttttttgttaccaccgcaacctacagTCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTACTTGTTCAAAAAG
gactaat putative branch site (score: 45)
tgactaattttgttta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctggccgcaccgtgccttggattcagagatttttcagcgaccatgaagatgcttttttaggccgagtgatatcctatcctttttcagcattgaagttcttcctcgtgactaattttgtttatttttttgttaccaccgcaacctacagTCTCAAGAGGTAGCCAAGGCTTTTGGAGCGGTCTGCACGCCAGAGTTCTACTTGTTCAAAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG