1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtatgaactatgaaccaattaaacaaacaaaaccaatttaattatctaggaatatggtcagcgaatcgacgttaatactgtacgtgtaaacactgtgctgttcagAAGATGGGAGGCGTGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGTCCAGCGGCAGCGGTGAGCCAAGCTAGCAGTAGGCCGGCTCCATCTGAAG
species | Zea mays |
transcript | GRMZM2G145579_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCATCACGCACCA AAGATGGGAGGCGTGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGTEST: gi|94479145|gb|EB708103.1|EB708103
genomic: TGTACGGGTTCGGAACGAACAGTGAAGGCCTTCATGATCATCACGCACCAgtatgaacta ... tgctgttcagAAGATGGGAGGCGTGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGT
EST: TTCATGATCATCACGCACCA AAGAT-GGAGGGGGGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGT
genomic: TTCATGATCATCACGCACCAgtatgaacta ... tgctgttcagAAGATGGGAGGCGTGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGT
aatatggtcagcgaatcgacgttaatactgtacgtgtaaacactgtgctgttcagAAGATGGGAGGCGTGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGTCCAGCGGCAGCGGTGAGCCAAGCTAGCAGTAGGCCGGCTCCATCTGAAG
cgttaat putative branch site (score: 28)
ttaatact TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgaactatgaaccaattaaacaaacaaaaccaatttaattatctaggaatatggtcagcgaatcgacgttaatactgtacgtgtaaacactgtgctgttcagAAGATGGGAGGCGTGTCGTTCCAGGAAGCCGCCATTGCAGTGCCAGCAGGTCCAGCGGCAGCGGTGAGCCAAGCTAGCAGTAGGCCGGCTCCATCTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG