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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaattgctacatgcatgcaaatagattttccagactatctccctgttactttttatcctaaaacttgttgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT

Basic information

species Zea mays
transcript GRMZM2G145258_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G145258_T01 (Zea mays), 3'ss of exon 5
lower sequence: PP1S17_306V6.1 (Physcomitrella patens), 3'ss of exon 5
---------------gtaattgctacatgcatgcaaatagattttcca----gactatctccctgttact--ttttatcctaaaacttgttgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT---
|| || || || | |||||| || | | || | || | || | ||| | | | | ||||||||||| ||||||| ||||| || |||| |||| ||||||||||||| | || ||| || | || | ||||||||||| || |||
actcagaatgagctcgtggtttctttatcgtgatgtgtcgattttttcatgtgatgaggttccacatgctgatattgttctatggtatttggttcgacagGTTCATGGGGACTACAGCGAGGAAGTCGGTGCGAAGATTGAGAGGCCTGTTGGGGACGAT---GCCGAAACCGATGCTGCTGCTGCCGCCGAGCCAGTTCCCG
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|211215691|gb|FL434867.1|FL434867
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|149105848|gb|EE291447.2|EE291447
EST:     AGGGGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|17921801|gb|BM259452.1|BM259452
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|24763569|gb|CA398741.1|CA398741
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTCAAGCTTCAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|30052363|gb|AI065652.2|AI065652
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|24767178|gb|CA402322.1|CA402322
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|213178623|gb|FM189778.1|FM189778
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|31360389|gb|CD444746.1|CD444746
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|84977073|gb|DW475495.1|DW475495
EST:     TGAAGATACTCAAGGCCCCCAAGTTTCGATCTTGGGGAAACTCATGGGAG                         GTTCATGGCGACCTACAAAGAGG
genomic: TGAAGATACTCAAGGCCCCCAAGTT-CGATCTTGGG-AAACTCATGG-AGgtaattgcta ... tgcttctcagGTTCATGGCGAC-TACAAAGAGG
EST: gi|19770034|gb|BQ034755.1|BQ034755
EST:     AGGTGAAGATACTCAAGGCCCCCCAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|16377119|gb|BI991771.1|BI991771
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|12971869|gb|BG267698.1|BG267698
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|5005674|gb|AI711736.1|AI711736
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|31359742|gb|CD444099.1|CD444099
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|18168263|gb|BM338103.1|BM338103
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|31357009|gb|CD441366.1|CD441366
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGCCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|37376013|gb|CF624502.1|CF624502
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|6563695|gb|AW231422.1|AW231422
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|83279071|gb|DV943079.1|DV943079
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|67018238|gb|CO446987.1|CO446987
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAAGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|213183157|gb|FM184569.1|FM184569
EST:     NGGTGAAGNTACTCAAGGCCCCCAAGTTCGATCTTGGGNAACTCATNGAG                         NTTCANNGCGACTA
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTA
EST: gi|166681393|gb|EG304290.1|EG304290
EST:     GTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAAAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGC
genomic: GTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGA--Ggtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGC
EST: gi|84351598|gb|DW246003.1|DW246003
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|67042647|gb|CO468902.1|CO468902
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACNAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|6527053|gb|AW216269.1|AW216269
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|67013865|gb|CO442614.1|CO442614
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|4837583|gb|AI670673.1|AI670673
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|84977492|gb|DW475914.1|DW475914
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|13490883|gb|BG517647.1|BG517647
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAAACCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|95107896|gb|EB740125.1|EB740125
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|4647336|gb|AI622411.1|AI622411
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|19436587|gb|BM952997.1|BM952997
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
EST: gi|5871099|gb|AW017540.1|AW017540
EST:     AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAG                         GTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC
genomic: AGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTC

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 4 RNA-Seq libraries.


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 641

TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 696

TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 655

TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT


Block sizes: 49 (upstream exon), 49 (downstream exon)
Score: 313

TGAGAAGTCTACCTCCAGCATCTTCCCACTTCAAAACGTCTTCATCCGCAAGGTGAAGATACTCAAGGCCCCCAAGTTCGATCTTGGGAAACTCATGGAGgtaattgcta ... tgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT




 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gattttccagactatctccctgttactttttatcctaaaacttgttgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT
                                tcctaaa  putative branch site (score: 313)
 ttgcttctc  putative PPT
 tttttatcctaaaa  TA-rich tract
















Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
gtaattgctacatgcatgcaaatagattttccagactatctccctgttactttttatcctaaaacttgttgcttctcagGTTCATGGCGACTACAAAGAGGATGTTGGTGTGAAGCTTGAGAGGCCTGTCGAGGGAGATGAGGCTGGGCAGGAGGTTGCTGCTGCCGAGTAGTTTGTTT

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC