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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatgtatgattctcactttctggtagctggaatgaaaattacaataactacatggaatcatgtgactatgaagcttctgctattctttccagAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTG

Basic information

species Zea mays
transcript GRMZM2G144254_T02
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G144254_T06 (Zea mays), 3'ss of exon 4
lower sequence: LOC_Os02g31874.1 (Oryza sativa), 3'ss of exon 5
gtatgtatgattctc---------actttctggtagctggaatgaaaattacaat--aactacatggaatcatgtgactatgaagcttctgctattctttccagAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTG
||||| ||  ||||          | ||| |  ||   | |||||     | | |   | ||| |||||| ||     ||||||| || | || | |||| ||||||||||||||| ||||||||||| || |||||||| |||||| |||| |||||||| || |||||||| || |
gtatgcattgttctactttttggaatttttttataaaggaaatgagttccaaacttccaatacttggaattatagatttatgaagtttttactctgcttttcagAGTCATGGTAGCAACAACATTTATTGTATTTGGCAATATCTTCCTAGTTTCCTTTGGTAATCATCAATCTCCAG


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

attacaataactacatggaatcatgtgactatgaagcttctgctattctttccagAGTCATGGTAGCCACAACATTTATAGTCTTTGGCAACATCTTCTTAGTATCCTTTGGCAACCATCAATCACCTG
    caataac  putative branch site (score: 2)
                                    cttctgctattctttc  putative PPT
     aataacta  TA-rich tract