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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTGTTCAAGATATTCAG

Basic information

species Zea mays
transcript GRMZM2G143213_T02
intron # 5
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18163570|gb|BM333409.1|BM333409
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|18166704|gb|BM336543.1|BM336543
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|21390004|gb|BQ528053.1|BQ528053
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|17929629|gb|BM266589.1|BM266589
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|60397283|gb|DN230099.1|DN230099
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|12968998|gb|BG265943.1|BG265943
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|5525594|gb|AI861487.1|AI861487
EST:     TTCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTGTGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|5819371|gb|AI987577.1|AI987577
EST:     TCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTGTGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|21809566|gb|BQ667884.1|BQ667884
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|78074515|gb|DV502949.1|DV502949
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|18162372|gb|BM332211.1|BM332211
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAATTGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|110194217|gb|EC876115.1|EC876115
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|37384260|gb|CF629190.1|CF629190
EST:     TTCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTGTGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|31910663|gb|CD651537.1|CD651537
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|67024512|gb|CO453261.1|CO453261
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAACCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|18167215|gb|BM337054.1|BM337054
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|22542162|gb|BU092600.1|BU092600
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCG
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCG
EST: gi|78025082|gb|DV493469.1|DV493469
EST:     TCTTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|60398759|gb|DN231575.1|DN231575
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|5847313|gb|AW000392.1|AW000392
EST:     TTCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTGTGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|211268426|gb|FL478582.1|FL478582
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACMCCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|60394332|gb|DN227202.1|DN227202
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|4967063|gb|AI692029.1|AI692029
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|27575994|gb|CA998688.1|CA998688
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|60394730|gb|DN227600.1|DN227600
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|32916297|gb|CF021109.1|CF021109
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAGCCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|31909621|gb|CD651010.1|CD651010
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|78093070|gb|DV521444.1|DV521444
EST:     TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|60398446|gb|DN231262.1|DN231262
EST:     TTCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTGTGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG
EST: gi|60344999|gb|DN211972.1|DN211972
EST:     TTCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTGTGGTCTGTG                         GGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGAT
genomic: TCCTTCTTGGAGCGAGACAGTATTCCACACCAGTTGACGTATGGTCTGTGt ... tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
        10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220 
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
tGGCTGTATCTTTGCGGAAATGGTGAACCAAAAGCCACTATTCCCTGGTGATTCTGAGATCGACGAACTGTTCAAGATATTCAG

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