1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
...cgttttggagaattgtgtggtgcattgcattcctcatcattgtatgtttttattgtttgattgtacatatggtgtgatactgtggtactgctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
species | Zea mays |
transcript | GRMZM2G142984_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|67014473|gb|CO443222.1|CO443222
genomic: TACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|149070923|gb|EE159330.2|EE159330
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|149000223|gb|EE037369.2|EE037369
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|149107225|gb|EE189109.2|EE189109
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|211412953|gb|FL027553.1|FL027553
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|89758395|gb|DY687589.1|DY687589
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|67015787|gb|CO444536.1|CO444536
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: CCTTCTTGCTGATAAACGATACTGTG GCGATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|149102743|gb|EE188274.2|EE188274
genomic: CCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGC-ATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|60344970|gb|DN211943.1|DN211943
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCTTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|67016231|gb|CO444980.1|CO444980
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|111189956|gb|EE288092.1|EE288092
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: AAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|148965239|gb|EC906094.2|EC906094
genomic: AAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|211448014|gb|FL403750.1|FL403750
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTATAGTTACATATCTTTTGTCAGCCTTCATGCTGATAAACGATACTGTG GCATACTATATEST: gi|211115805|gb|FL350299.1|FL350299
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATAT
EST: TACAATTACATATCCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACC-TTCTAAGGCAGEST: gi|148995982|gb|EE035233.2|EE035233
genomic: TACAATTACATATC-TTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAGEST: gi|110531048|gb|EE035232.1|EE035232
genomic: TTACAATTACATATCTTTTGTCAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
EST: CAGCCTTCTTGCTGATAAACGATACTGTG GCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
genomic: CAGCCTTCTTGCTGATAAACGATACTGTGgtatgtacta ... ctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
gtttttattgtttgattgtacatatggtgtgatactgtggtactgctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
gtttgat putative branch site (score: 546)
ctgcttt putative PPT
tattgttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cgttttggagaattgtgtggtgcattgcattcctcatcattgtatgtttttattgtttgattgtacatatggtgtgatactgtggtactgctttatgtagGCATACTATATCCTGAAAAGGAAGAAGTCCGTACCCTTCTAAGGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT
- - - - - - - - gtggtgc
- - - - - - - - - - - - -tgcattc
- - - - - - - - - - - - - - - - - - - -ttgtatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - ttgattg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -gatactg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ggtactg