1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...ctagcgccttttatgttctccttttgtattttccggttccaattatactgtgaactttccatttccttctttgtgttgtgactttgtgtccatctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATGGTGACAAACCCTTGCAATAGCTGTTCATCAATACTTGTATTTATTTTA
species | Zea mays |
transcript | GRMZM2G142836_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATEST: gi|211331145|gb|FL454096.1|FL454096
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTYTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATEST: gi|211425343|gb|FL007530.1|FL007530
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCAACAAGCCTGTTCACCAGGTTGTCCATGGTAAGEST: gi|211425342|gb|FL007529.1|FL007529
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
EST: CAGTTGCAGAAGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATEST: gi|16379668|gb|BI993084.1|BI993084
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATEST: gi|13515717|gb|BG517993.1|BG517993
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
EST: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAG AAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
genomic: CAGTTGCAGAGGTTGGGTGTGAGCCTATTCTGCATATGCGGCATTTCCAGgtctctccca ... catctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAAT
tactgtgaactttccatttccttctttgtgttgtgactttgtgtccatctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATGGTGACAAACCCTTGCAATAGCTGTTCATCAATACTTGTATTTATTTTA
tccatctttc CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ctagcgccttttatgttctccttttgtattttccggttccaattatactgtgaactttccatttccttctttgtgttgtgactttgtgtccatctttcagAAAACAAGGAGGTTACCCAACAAGCTTGTTCACCAGGTTGTCCATGGTAATGGTGACAAACCCTTGCAATAGCTGTTCATCAATACTTGTATTTATTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - ttatgtt
- - - - - - - - - - - - tgtattt
- - - - - - - - - - - - - - - - - - - - - - -tactgtg