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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgaggcgctgttgttccgtatcgttctgttgaggctaaaacacactcctcattttcctgaccagcttgttgttcctgtcttcagATGCTCATGGATGTTCTGGATTTTCTCAGATTGCCAAAGAGGAAGCTGTTCAGTCGACATGTGAAAATCCACACAAAACGATTGTGCGATCATATAGATA

Basic information

species Zea mays
transcript GRMZM2G142507_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G142507_T02 (Zea mays), 3'ss of exon 6
lower sequence: LOC_Os01g57550.1 (Oryza sativa), 3'ss of exon 5
gtgaggcgctgttgttccgtatcgttctgtt--gaggctaaaaca------------cactcctcattttcctgaccagcttgttgttcctgtcttcagATGCTCATGGATGTTCTGGATTTTCTCAGATTGCCAAAGAGGAAGCTGTTCAGTCGACATGTGAAAATCCACACAAAACGATTGTGCGATCATATAGATA
||||| | || ||| |   |||     |||   |||||| ||  |            | |||    | |  || | |||||| || || || |||||||| |||||||||||| ||||||||||| |||||||| ||||| ||||||| |||| | |||||||||||||| || ||||  ||| | |||||||||||||
gtgagtc-ctattgctttatatatccttgtccggaggctgaatgagcatctctctctctctctctctctctctaaacagctttttttttctttcttcagAAGCTCATGGATGTCCTGGATTTTCTGAGATTGCCTAAGAGAAAGCTGTCCAGTAGGCATGTGAAAATCCATACCAAACTTTTGCGTGATCATATAGATA
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|71757299|gb|DR955236.1|DR955236
EST:     ACACCAGGCACGTTGTCCTGTACTACGAGGATGTTGTCAGCAATCGCACG                         ATGCTCATGGATGTTCTGGATTTTCTCAGATTGCCAAAGAGGAAGCTGTTC
genomic: ACACCAGGCACGTTGTCCTGTACTACGAGGATGTTGTCAGCAATCGCACGgtgaggcgct ... ctgtcttcagATGCTCATGGATGTTCTGGATTTTCTCAGATTGCCAAAGAGGAAGCTGTTC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tgaggctaaaacacactcctcattttcctgaccagcttgttgttcctgtcttcagATGCTCATGGATGTTCTGGATTTTCTCAGATTGCCAAAGAGGAAGCTGTTCAGTCGACATGTGAAAATCCACACAAAACGATTGTGCGATCATATAGATA
                         tcctgac  putative branch site (score: 2)
                                       ttgttcctgtcttc  putative PPT
      taaaaca  TA-rich tract