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gtctgatcaaatgcttatatatccactttatgaaaaatgtggctaaccgaggtgattactttactgtatctaaactgaggatgatcatttattttacctttttgcattatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT
species | Zea mays |
transcript | GRMZM2G142030_T01 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTEST: gi|32940747|gb|CF045566.1|CF045566
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTEST: gi|71315834|gb|DR794582.1|DR794582
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
EST: ATGGGTTATGTTTACAA-CTCTGCCATCATTCCCTGGCCTA-TTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAAACTCATTTGTCA-TGGEST: gi|22818806|gb|BU498896.1|BU498896
genomic: ATGGGTTATGTT-ACAAACTCTGCCATCATTCCCTG-CCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAA-CTCAATTGTCAATGG
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTEST: gi|211205538|gb|FL096683.1|FL096683
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTEST: gi|33100006|gb|CF059966.1|CF059966
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTEST: gi|87157040|gb|DY401829.1|DY401829
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTEST: gi|33102015|gb|CF061975.1|CF061975
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
EST: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAG GGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
genomic: GCATGGGTTATGTTACAAACTCTGCCATCATTCCCTGCCTAATTGGAAAGgtctgatcaa ... attatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGT
ttactgtatctaaactgaggatgatcatttattttacctttttgcattatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT
atctaaa putative branch site (score: 66)
ttatttc putative PPT
atttattttacctttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtctgatcaaatgcttatatatccactttatgaaaaatgtggctaaccgaggtgattactttactgtatctaaactgaggatgatcatttattttacctttttgcattatttcagGGTGGGCTGATAATTAGTGACTCTCTGAATCATAACTCAATTGTCAATGGTGCGAGAGGATCTGGTGCAACTGTTAGGGTTTTCCAGCATAACT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT