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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagtatttgactaaataatacaattgaaaaaacaagcaaacaaatcaacgaaatttaaaatatgttagtgtcttaatgttcaaatgcttgtctgtgttacattaagaaccctctaattcaacagGTGTGCATTCAGAAGTCTTCGCTGATGATAATTCAAGCTGGGACTCCATGGTGCGAAACTACTGGTCTTTGCTATCCCCACTTATATTTTCAGACCATCC

Basic information

species Zea mays
transcript GRMZM2G140893_T01
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G140893_T02 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g51860.1 (Oryza sativa), 3'ss of exon 5
gtaagtatttgactaaataatacaattgaaaaaacaagcaaacaaatcaacgaaatttaaaatatgttagtgtcttaatgttcaaatgcttgtctgtgttacattaagaaccctctaattcaacagGTGTGCATTCAGAAGTCTTCGCTGATGATAATTCAAGCTGGGACTCCATGGTGCGAAACTACTGGTCTTTGCTATCCCCACTTATATTTTCAGACCATCC
|||||| |  | ||||||   ||  | || ||||  | |||||| | | || | |   | |||||| |   | | | |     | ||   |   | |||| |  |     || | |  ||    ||| ||||||||||||| ||| || ||  ||| | ||| ||||||||| |||||||||||||||||||||||||| || || ||||||||||| || |||||
gtaagtgtcagtctaaatgcaac--tggagaaaaataacaaacagaactac-agacaaacaatatggtgaagacatga-----atatttctaaat-tgtttctctg----ccttgttgtt----agGGGTGCATTCAGAAGACTTTGCCGAGAATACTGCAAACTGGGACTCAATGGTGCGAAACTACTGGTCTTTGCTGTCTCCTCTTATATTTTCTGATCATCC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtcttaatgttcaaatgcttgtctgtgttacattaagaaccctctaattcaacagGTGTGCATTCAGAAGTCTTCGCTGATGATAATTCAAGCTGGGACTCCATGGTGCGAAACTACTGGTCTTTGCTATCCCCACTTATATTTTCAGACCATCC
                                         ctctaat  putative branch site (score: 3)
                                       ccctcta  CT-rich tract
                           ttacattaa  TA-rich tract