1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...cttccactataaagatgtcgattgcatgtacttgctgttatactcaattcttcagcataactttcatctatctgcacaatctaatttacctccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG
species | Zea mays |
transcript | GRMZM2G140689_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|71445647|gb|DR826697.1|DR826697
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|88754303|gb|DY538444.1|DY538444
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|93013575|gb|EB639095.1|EB639095
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|88746998|gb|DY531139.1|DY531139
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|74236372|gb|DT644286.1|DT644286
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|76021687|gb|DT948857.1|DT948857
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19770099|gb|BQ034820.1|BQ034820
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: CTGAGCTTGAAAAGCTGGGGCAGAAGTATCG-GTGGNCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAEST: gi|50326783|gb|CO521909.1|CO521909
genomic: CTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGG-CCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAA
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|74245266|gb|DT653180.1|DT653180
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|211295565|gb|FL447041.1|FL447041
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|50332974|gb|CO528100.1|CO528100
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|89247134|gb|DY618920.1|DY618920
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGACTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|211091999|gb|FL476412.1|FL476412
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|93011681|gb|EB637201.1|EB637201
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|74239821|gb|DT647735.1|DT647735
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|213173441|gb|FM193835.1|FM193835
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|76018425|gb|DT945595.1|DT945595
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|19769624|gb|BQ034345.1|BQ034345
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|50326824|gb|CO521950.1|CO521950
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|78025632|gb|DV494019.1|DV494019
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|33468200|gb|CF245249.1|CF245249
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|78077064|gb|DV505498.1|DV505498
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|76292363|gb|DV031931.1|DV031931
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACEST: gi|5688786|gb|AI941801.1|AI941801
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
EST: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAG AATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
genomic: GTTATGGCTGAGCTTGAAAAGCTGGGGCAGAAGTATCGTGTGGCCTTGAGgtgtgctcct ... tccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAAC
aattcttcagcataactttcatctatctgcacaatctaatttacctccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG
atctaat putative branch site (score: 3)
tttacctccctcac CT-rich tract
aatctaattta TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| cttccactataaagatgtcgattgcatgtacttgctgttatactcaattcttcagcataactttcatctatctgcacaatctaatttacctccctcacagAATTGCCAAGGACCCTAGGTTCCAAAGATTAGCATGCACACACAAGGGAACCTATGCTGATGACTGCATTGTGGAGAGGGTCACTCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG