1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaaacttcttgtgaaccctgcagataaataggcttgaagtagaggagcagcattgttgcaatcggtatatctaaccaatcgtgattttttttgtttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACCATGTGTATGAGAGCAGGAAGGAGCGTGAAAGGGAAGAGGAAGAAGATA
species | Zea mays |
transcript | GRMZM2G140160_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTG GACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACEST: gi|116814721|gb|EC857337.1|EC857337
genomic: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTGgtaaacttct ... tttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGAC
EST: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTG GACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACEST: gi|60347302|gb|DN214275.1|DN214275
genomic: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTGgtaaacttct ... tttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGAC
EST: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTG GACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACEST: gi|4572934|gb|AI586583.1|AI586583
genomic: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTGgtaaacttct ... tttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGAC
EST: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTG GACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACEST: gi|37416454|gb|CF645877.1|CF645877
genomic: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTGgtaaacttct ... tttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGAC
EST: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTG GACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGAC
genomic: AGCTTCCCTGCAAGCATCTCTTCCATCCTCTTTGTCTGAAGCCATGGCTGgtaaacttct ... tttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGAC
agcattgttgcaatcggtatatctaaccaatcgtgattttttttgtttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACCATGTGTATGAGAGCAGGAAGGAGCGTGAAAGGGAAGAGGAAGAAGATA
atctaac putative branch site (score: 2)
ttttttttgtttcatt putative PPT
tgattttttttgtttc TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaacttcttgtgaaccctgcagataaataggcttgaagtagaggagcagcattgttgcaatcggtatatctaaccaatcgtgattttttttgtttcatttagGACGAGAACAACTCCTGCCCTATCTGCCGGCATGAGCTGAGGACGGATGACCATGTGTATGAGAGCAGGAAGGAGCGTGAAAGGGAAGAGGAAGAAGATA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG