Sequence
atgc intronic sequence ATGC exonic sequencegtaagcttctttgatttctgtgtacttcctgctctcataaataaatactcaaaaaaagtatactcctgcttctctctcccaccctgtctcttttttacttgaattttgtatattgggcgacacatttaccgtgctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
Basic information
Orthologous splice sites
atgc intronic sequence ATGC exonic sequence
upper sequence: GRMZM2G139977_T01 (Zea mays), 3'ss of exon 11
lower sequence: LOC_Os02g04490.1 (Oryza sativa), 3'ss of exon 12
gtaagcttctttgatt-tctgtgtacttcctgctctcataaat-aaatactcaaaaaaagtatactcctgcttctctctc--ccaccctgtctcttttttacttgaattttgtatattgggcgacacatttaccgtg--ctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
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gtaggattgtacagtggtttgcgtgctccttattttgatagatcacatggctgctagcactctacccctctttccctttctatcatccttgctcagtatttgtttttttcactttactggatggcatctttaccatgaacttgatttgttatgtgcagCTTGGGGAAACCATTTATCCAATGAAGGAAGATTTCATTATGGTTCATTTGCAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAAACGTT
upper sequence: GRMZM2G139977_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA15G00250.1 (Glycine max), 3'ss of exon 12
gtaagcttctttgatttctgtgtacttcctgctctcataaataaatactcaaaaaaagtatactcctgcttctctctcccaccctgtctcttt--tttacttgaattttgtatattgggcgacacatttaccgtgctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
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---------------------------------------------------caaattatatcttctcacttattgcatttaacatttatatggggtttccttgag---tggaaatagcaatttccttgtaataaagcttttgatctctatccagCTTGGTGAAACCATTTGCCCAATGAAGGAAGATTTTATCATGGTTCATTTGCAGCATGCATGCACTCATTGCTGTATTCTAATGGTGTCTGGCAACCGTT
upper sequence: GRMZM2G139977_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA07G00230.1 (Glycine max), 3'ss of exon 12
gtaagcttctttgatttctgtgtacttcctgctctcataaataaatactcaaaaaaagtatactcctgcttctctctcccaccctgtctcttt-tttacttgaattttgtatattgggcgacacatttaccgtgctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
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---------------------------------------------------aaacatcactattgtttccttactttactgctttcaatatttatctgttaggttcccttatgtttgataat-ttcttataaaattctggatc-tttctccagCTTGGTGAAACCATTTGCCCGATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGCAACCGTT
upper sequence: GRMZM2G139977_T01 (Zea mays), 3'ss of exon 11
lower sequence: GLYMA08G24290.1 (Glycine max), 3'ss of exon 14
gtaagcttctttgatttctgtgtacttcctgctctcataaataaatactcaaaaaaagtatactcctgcttctctctcccaccct-gtctcttttttacttgaattttgtatattgggcgacacatt-taccgtgctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
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---------------------------------------------------aaacattaatattgtttccttactttactgctttcaaatatttatctgttaggttccttatgtttgataatttcttataaaattcttgatctt---tctccagCTTGGTGAAACCATTTCCCCAATGAAGGAAGATTTTATTATGGTTCATTTGCAGCATGCATGTACTAGCTGTTGTATTTTAATGGTGTCTGGCAACCGTTMapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|76010441|gb|DT937611.1|DT937611EST: ACACCGATCTCAGCGGGAATGCTTCCAAGGATGCTATGTTGATGCAAAAG CTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTA
genomic: ACACCGATCTCAGCGGGAATGCTTCCAAGGATGCTATGTTGATGCAAAAGgtaagcttct ... gtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTA
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.cttgaattttgtatattgggcgacacatttaccgtgctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
attttgtatatt TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagcttctttgatttctgtgtacttcctgctctcataaataaatactcaaaaaaagtatactcctgcttctctctcccaccctgtctcttttttacttgaattttgtatattgggcgacacatttaccgtgctctattttgtgtatgcagCTTGGTGAAACCATATATCCTATGAAGGAAGATTTCATTATGGTCCATTTACAGTATTCGTGTAGTCACTGTTGTACCCTTATGGTGTCTGGAAGACGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA