1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tgtgactgaatctgcatatttcttcagagcttataaatgtgatatgaatgtttcataaaactacagtttggctgatgatatgtatacatcttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTCGAGCACAGTTGCTGCCTCAGGAGCCTTATTATTTCCTTTTGTTTTAGT
species | Zea mays |
transcript | GRMZM2G139683_T02 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|78021237|gb|DV489624.1|DV489624
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|5650062|gb|AI920422.1|AI920422
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|28911118|gb|CB331779.1|CB331779
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|101390996|gb|EB817434.1|EB817434
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|211398948|gb|FL436156.1|FL436156
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|17932478|gb|BM269438.1|BM269438
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|18163991|gb|BM333830.1|BM333830
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|93016786|gb|EB642306.1|EB642306
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|94479606|gb|EB708564.1|EB708564
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|93016785|gb|EB642305.1|EB642305
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|18165240|gb|BM335079.1|BM335079
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|6695598|gb|AW288706.1|AW288706
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|32837416|gb|CD977094.1|CD977094
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|37382055|gb|CF627949.1|CF627949
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|17929753|gb|BM266713.1|BM266713
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTEST: gi|5901084|gb|AW042184.1|AW042184
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
EST: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAA GATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGNCGGATT
genomic: AATATGCCGAAGAATGACATGAGAAATGCTATGGACAATAGAAAAAGGAAgtatgcacca ... ttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATT
gaatgtttcataaaactacagtttggctgatgatatgtatacatcttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTCGAGCACAGTTGCTGCCTCAGGAGCCTTATTATTTCCTTTTGTTTTAGT
ggctgat putative branch site (score: 58)
tcttcatc putative PPT
tttcataaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tgtgactgaatctgcatatttcttcagagcttataaatgtgatatgaatgtttcataaaactacagtttggctgatgatatgtatacatcttcatcgcagGATGGGCTAATTGAAGTTCTTGCGCAACTTTTCAACGGACACTGCCGGATTCGAGCACAGTTGCTGCCTCAGGAGCCTTATTATTTCCTTTTGTTTTAGT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - actgaat
- - - - - -ctgcata
- - - - - - - - - - - - - - - - - - - - - -atgaatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - aactaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - gctgatg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -atatgta