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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaggtgtttgatatcaacaaagaaatcttgaatgcaatttgtttatgatactgagagggtacaaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTATCAC

Basic information

species Zea mays
transcript GRMZM2G139643_T05
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: GRMZM2G139643_T05 (Zea mays), 3'ss of exon 5
lower sequence: LOC_Os02g12850.1 (Oryza sativa), 3'ss of exon 5
gtaggtgtttgatatcaacaaagaaatcttgaatgcaatttgtttatgat----actgagagggtacaaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTATCAC
|||  | || ||  |  | | | ||||||| || |   | |  |||  ||    ||||| | | ||  |||||| |||||| |||| ||| ||||| ||  ||||||||||  | ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| ||||
gtacttattagacttacagataaaaatcttcaacgatttgtagttacaatgaaaactgacaagatattaaattttagATGAGTTGAGGGAGCACTTCTCCCCATATGGTAAGATTGTTGAACATCAAATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGATTTGGTTTTGTCAC
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|30088355|gb|CB886560.1|CB886560
EST:     TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAG                         ATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgttt ... aaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
EST: gi|71773617|gb|DR971515.1|DR971515
EST:     TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAG                         ATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA
genomic: TAAGACAAGAAAGATCTTCATCGGTGGGCTACCGCCATCTCTTACTGAAGgtaggtgttt ... aaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGA


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

caaagaaatcttgaatgcaatttgtttatgatactgagagggtacaaaatttcagATGAATTGAAGGATCACTTTTCATCATATGGTAATGTGGTTGAACATCAGATAATGCTTGATCATAGCACTGGGCGTTCTAGAGGGTTTGGTTTTATCAC
                  aatttgtttatgata  TA-rich tract